|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-12
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yrdD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yrdD
Search strains by all related name:
yrdD b3283 ECK3270 f169 JW5949
|
General information (Go to Linear View: )
|
|
Gene Name
|
yrdD
|
|
Alternative name
|
b3283,ECK3270,f169,JW5949
|
|
Location, Length
|
3,429,442 - 3,429,984
(
-
)
;
73.92
min
;
543
(bp) ,
180
(aa)
|
|
Product
|
putative DNA topoisomerase
|
|
Operon Name
|
yrdD-rimN-aroE-yrdB
|
|
Note
|
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( yrdD )
GO:0003916
;
DNA topoisomerase activity ( yrdD )
GO:0005694
;
chromosome ( yrdD )
GO:0006265
;
DNA topological change ( yrdD )
GO:0006268
;
DNA unwinding during replication ( yrdD )
|
|
PID
|
48994931
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YRDD_ECOLI
(
P45771
)
|
|
- Protein name
|
Hypothetical protein yrdD.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yrdD; OrderedLocusNames=b3283;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yrdD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yrdD
|
|
PSI-BLAST
|
Hypothetical protein yrdD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted DNA topoisomerase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MAKSALFTVR NNESCPKCGA ELVIRSGKHG PFLGCSQYPA CDYVRPLKSS ADGHIVKVLE GQVCPACGAN
0071 LVLRQGRFGM FIGCINYPEC EHTELIDKPD ETAITCPQCR TGHLVQRRSR YGKTFHSCDR YPECQFAINF
0141 KPIAGECPEC HYPLLIEKKT AQGVKHFCAS KQCGKPVSAE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ccgggctgcg aaaatgcgta ccagcaaatg
-070 gaagaattac tctttgaagt gaatgaaggt atgctgcatt aatcatttct ttaattcagc ataagttgtt
0001 atggcgaaat cagcactgtt cacggtgcgt aataatgagt cctgcccaaa gtgcggggct gaactggtta
0071 ttcgatccgg gaaacacggt ccgtttcttg gatgctcaca gtatccggcg tgtgactacg tccgtcctct
0141 gaaatcttca gcggatggac atatcgtcaa agttctggag gggcaggttt gccctgcatg tggcgcaaat
0211 ctggtattac gccagggacg ctttggtatg tttattggtt gcattaacta ccctgaatgc gaacataccg
0281 aacttatcga taaaccggac gaaacagcaa ttacatgccc ccaatgtcgg acgggccatc tggtccagcg
0351 ccgctcccgt tatggcaaaa catttcactc ttgtgatcgc tacccggagt gtcaatttgc cattaacttc
0421 aaacccatag ctggagaatg ccctgagtgt cattatccgc tactcatcga aaagaaaacc gcgcagggtg
0491 taaaacactt ttgtgccagt aaacaatgtg gaaagccggt ttcggcggaa taataacgtg aataataacc
0561 tgcaaagaga cgctatcgca gctgcgatag atgttctcaa tgaagaacgt gtcatcgcct atccaacgga
0631 agccgttttc ggt
|
