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PEC Original Annotations
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Essentiality
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Class
|
essential
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|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
tsaC
|
|
Related strains
|
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Strains Search
|
Search strains by gene name:
tsaC
Search strains by all related name:
tsaC b3282 ECK3269 f190 JW3243 rimN yrdC
|
General information (Go to Linear View: )
|
|
Gene Name
|
tsaC
|
|
Alternative name
|
b3282,ECK3269,f190,JW3243,rimN,yrdC
|
|
Location, Length
|
3,428,865 - 3,429,437
(
-
)
;
73.90
min
;
573
(bp) ,
190
(aa)
|
|
Product
|
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine-dependent ADP-forming ATPase
|
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Operon Name
|
yrdD-rimN-aroE-yrdB
|
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Note
|
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Function
|
enzyme; tRNA modification
|
|
Gene Ontology
|
GO:0003723
;
RNA binding ( yrdC )
|
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PID
|
2367210
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YRDC_ECOLI
(
P45748
)
|
|
- Protein name
|
Protein yrdC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yrdC; OrderedLocusNames=b3282;
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Homology Analysis
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BLAST
|
|
Bacteria
|
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GTOP
|
yrdC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, The Structure Of The Yrdc Gene Product From E.Coli
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein yrdC
|
|
PSI-BLAST
|
Protein yrdC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted ribosome maturation factor [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
SUA5
|
| Sequences |
Amino acid
FASTA format
|
0001 MNNNLQRDAI AAAIDVLNEE RVIAYPTEAV FGVGCDPDSE TAVMRLLELK QRPVDKGLIL IAANYEQLKP
0071 YIDDTMLTDV QRETIFSRWP GPVTFVFPAP ATTPRWLTGR FDSLAVRVTD HPLVVALCQA YGKPLVSTSA
0141 NLSGLPPCRT VDEVRAQFGA AFPVVPGETG GRLNPSEIRD ALTGELFRQG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgtcattatc cgctactcat cgaaaagaaa
-070 accgcgcagg gtgtaaaaca cttttgtgcc agtaaacaat gtggaaagcc ggtttcggcg gaataataac
0001 gtgaataata acctgcaaag agacgctatc gcagctgcga tagatgttct caatgaagaa cgtgtcatcg
0071 cctatccaac ggaagccgtt ttcggtgttg ggtgcgatcc tgatagcgaa acagcagtga tgcgactgtt
0141 ggagttaaaa cagcgtccgg ttgataaggg gctgatttta atcgcagcaa attacgagca gcttaaaccc
0211 tatattgatg acaccatgtt gactgacgtg cagcgtgaaa ccattttttc ccgctggcca ggtcctgtca
0281 cctttgtctt tcccgcgcct gcgacaacac cgcgctggtt gacgggccgc tttgattcgc ttgctgtacg
0351 agtcaccgac catccgttgg tggttgcttt gtgccaggct tatggtaaac cgctggtttc taccagtgcc
0421 aacttgagtg gattgccacc ttgtcgaaca gtagacgaag ttcgcgcaca atttggcgcg gcgttcccgg
0491 ttgtgcctgg tgaaacgggg gggcgtttaa atccttcaga aatccgcgat gccctgacgg gtgaactgtt
0561 tcgacagggg taacataatg gaaacctatg ctgtttttgg taatccgata gcccacagca aatcgccatt
0631 cattcatcag caatttgctc agcaactgaa tattgaacat ccc
|
