|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yrdB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yrdB
Search strains by all related name:
yrdB b3280 ECK3267 f85 JW3241
|
General information (Go to Linear View: )
|
|
Gene Name
|
yrdB
|
|
Alternative name
|
b3280,ECK3267,f85,JW3241
|
|
Location, Length
|
3,427,788 - 3,428,045
(
-
)
;
73.88
min
;
258
(bp) ,
85
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
yrdD-rimN-aroE-yrdB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1789674
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YRDB_ECOLI
(
P45795
)
|
|
- Protein name
|
Hypothetical protein yrdB.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yrdB; OrderedLocusNames=b3280;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yrdB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Conserved Hypothetical Protein
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yrdB
|
|
PSI-BLAST
|
Hypothetical protein yrdB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b3280 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MNQAIQFPDR EEWDENKKCV CFPALVNGMQ LTCAISGESL AYRFTGDTPE QWLASFRQHR WDLEEEAENL
0071 IQEQSEDDQG WVWLP
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gaatgctggt ggcacaggcg gctcatgcct
-070 ttcttctctg gcacggtgtt ctgcctgacg tagaaccagt tataaagcaa ttgcaggagg aattgtccgc
0001 gtgaatcagg ccatccagtt tccggacagg gaagagtggg acgagaataa aaaatgtgta tgttttcccg
0071 ctctcgtgaa tggtatgcaa ctgacatgcg cgatctctgg cgagagtctg gcgtatcgct ttactggaga
0141 tacgccagaa cagtggttag cgagttttcg tcagcatcgc tgggacctgg aagaagaagc ggaaaactta
0211 attcaggaac aaagtgaaga tgatcaaggc tgggtctggt taccctgatc cagatattcg tccttccatt
0281 tcacgtaatt attcgcggaa tagcgtaacc cagccttctc ttcatcactt aacgggcgga tctgtttgac
0351 ggggctac
|
