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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
|
OCL24
(D)
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|
Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
panF
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Related strains
|
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Strains Search
|
Search strains by gene name:
panF
Search strains by all related name:
panF b3258 ECK3245 JW3226 o485
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General information (Go to Linear View: )
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Gene Name
|
panF
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Alternative name
|
b3258,ECK3245,JW3226,o485
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Location, Length
|
3,405,629 - 3,407,080
(
+
)
;
73.40
min
;
1452
(bp) ,
483
(aa)
|
|
Product
|
pantothenate:sodium symporter
|
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Operon Name
|
yhdT-panF-prmA
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Note
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sodium/pantothenate symporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015937 - coenzyme A biosynthetic process
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Function
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transport; Transport of small molecules: Cations
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Gene Ontology
|
GO:0005215
;
transporter activity ( panF )
GO:0005886
;
plasma membrane ( panF )
GO:0006810
;
transport ( panF )
GO:0006811
;
ion transport ( panF )
GO:0006814
;
sodium ion transport ( panF )
GO:0009276
;
1-2nm peptidoglycan-based cell wall ( panF )
GO:0015081
;
sodium ion transmembrane transporter activity ( panF )
GO:0015233
;
pantothenate transporter activity ( panF )
GO:0015293
;
symporter activity ( panF )
GO:0015887
;
pantothenate transport ( panF )
GO:0016020
;
membrane ( panF )
GO:0016021
;
integral to membrane ( panF )
GO:0031402
;
sodium ion binding ( panF )
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PID
|
87082237
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EC number
(KEGG Pathway)
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|
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
PANF_ECOLI
(
P16256
;
P76679
)
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- Protein name
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Sodium/pantothenate symporter
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- Synonyms
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Pantothenate permease
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- Gene name
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Name=panF; OrderedLocusNames=b3258;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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panF
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
|
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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Sodium/pantothenate symporter
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PSI-BLAST
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Sodium/glucose cotransporter 1
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|
nr
(database updated :
2007.02.20
)
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BLAST
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sodium/panthothenate symporter [Escherichia coli O157:H7 EDL933]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
NA_SOLUT_SYMP_1
NA_SOLUT_SYMP_2
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MMBR References
|
J Bacteriol. 1990;172(7):3842-8.
Cloning, sequence, and expression of the pantothenate permease (panF) gene of Escherichia coli.
Jackowski S, Alix JH.
(
2193919
)
|
J Bacteriol. 1985;164(1):136-42.
Isolation and characterization of Escherichia coli pantothenate permease (panF) mutants.
Vallari DS, Rock CO.
(
2995306
)
|
J Bacteriol. 1993;175:7178-7188
Cotranscription of two genes necessary for ribosomal protein L11 methylation (prmA) and pantothenate transport (panF) in Escherichia coli K-12.
Vanet, A., J. A. Plumbridge, and J.-H. Alix.
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| Sequences |
Amino acid
FASTA format
|
0001 MQLEVILPLV AYLVVVFGIS VYAMRKRSTG TFLNEYFLGS RSMGGIVLAM TLTATYISAS SFIGGPGAAY
0071 KYGLGWVLLA MIQLPAVWLS LGILGKKFAI LARRYNAVTL NDMLFARYQS RLLVWLASLS LLVAFVGAMT
0141 VQFIGGARLL ETAAGIPYET GLLIFGISIA LYTAFGGFRA SVLNDTMQGL VMLIGTVVLL IGVVHAAGGL
0211 SNAVQTLQTI DPQLVTPQGA DDILSPAFMT SFWVLVCFGV IGLPHTAVRC ISYKDSKAVH RGIIIGTIVV
0281 AILMFGMHLA GALGRAVIPD LTVPDLVIPT LMVKVLPPFA AGIFLAAPMA AIMSTINAQL LQSSATIIKD
0351 LYLNIRPDQM QNETRLKRMS AVITLVLGAL LLLAAWKPPE MIIWLNLLAF GGLEAVFLWP LVLGLYWERA
0421 NAKGALSAMI VGGVLYAVLA TLNIQYLGFH PIVPSLLLSL LAFLVGNRFG TSVPQATVLT TDK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGGTTTGAGA TGGCCTGCAT CCTGACGCCG
-070 CTGCTGTTTA TTGGACTGTG CTGGGCGATG GTGAAATTTA TCTATCGCGA TATCCCACTG GAGGATGACG
0001 atgcagcttg aagtaattct accgctggtc gcctatctgg tggtggtgtt cggtatctcg gtttatgcga
0071 tgcgtaaacg gagcaccggc accttcctta atgagtattt cctcggcagc cgctctatgg gcggtattgt
0141 gctggcgatg acgctcaccg cgacctatat cagtgccagt tcgtttatcg gcgggccagg agctgcttat
0211 aaatacgggc tgggctgggt attgctggcg atgattcagc ttcctgcagt ctggctttca ctcggtattc
0281 tcggcaagaa gtttgcgatt cttgcgcgcc gctacaatgc agtgacgctg aacgatatgc tgtttgcccg
0351 ctaccagagt cgtcttctgg tgtggctggc gagtttgagt ttgctggttg cgttcgttgg tgcgatgacc
0421 gtgcagttta tcggcggtgc gcgcctgctg gaaaccgcgg cgggtattcc ttatgaaacc gggctgctga
0491 tttttggtat cagcattgcg ttatataccg cctttggtgg ctttcgcgcc agcgtgctga acgacaccat
0561 gcaagggctt gtgatgctga ttggcaccgt tgtgctgctt attggcgtag tacatgccgc tggcggctta
0631 agtaacgcag tacagacctt gcaaaccatc gatccgcaac tggttacgcc acaaggcgct gacgatattc
0701 tgtcgcctgc ctttatgacg tcgttctggg tactggtgtg ttttggcgtg attggcctgc cgcatactgc
0771 ggtgcgctgt atctcttata aagacagcaa agccgtacat cgggggatca tcatcggtac gattgtggtc
0841 gcaattctga tgttcggtat gcacctggcc ggagcgttag gtcgggcggt gatccccgat ctcaccgtac
0911 cggacctggt gatcccaacg ttaatggtaa aagtgctgcc accgtttgct gccgggatct tcctggctgc
0981 accgatggct gcgatcatgt cgacaattaa cgcccaactg ctgcaaagtt ccgctacgat cattaaagat
1051 ctctatctga atatccgtcc ggatcaaatg caaaacgaga cgcgtctgaa gcggatgtcg gcggtaatta
1121 cgttagttct cggcgcgttg ctgctgcttg ccgcctggaa gccgccagaa atgatcatct ggctgaattt
1191 gttggccttc ggtgggctgg aagccgtttt cctgtggccg ctggtgctgg gtctttactg ggaacgcgcc
1261 aacgccaaag gcgcgctaag tgcgatgatc gttggcggcg tgctgtatgc cgtactcgcg acgctgaata
1331 ttcagtacct gggcttccac cctatcgtgc cctcgttact actaagtttg ctggctttcc tggtcggaaa
1401 ccgtttcggt acatccgtcc cgcaagctac cgttttgact actgataaat aaAGAGTTTT GCCATGCCTT
1471 GGATCCAACT GAAACTGAAC ACCACCGGCG CGAACGCGGA AGATCTTAGC GATGCGCTGA TGGAAGCGGG
1541 TGCCGTTTCT AT
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