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PEC Original Annotations
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Essentiality
|
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Class
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non-essential
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References (PMID)
|
|
|
Deletion
|
OCL25,26-1
(D)
,
OCL26
(D)
,
OCL26-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
aaeR
|
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Related strains
|
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Strains Search
|
Search strains by gene name:
aaeR
Search strains by all related name:
aaeR b3243 ECK3232 JW3212 o309 qseA yhcS
|
General information (Go to Linear View: )
|
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Gene Name
|
aaeR
|
|
Alternative name
|
b3243,ECK3232,JW3212,o309,qseA,yhcS
|
|
Location, Length
|
3,387,542 - 3,388,471
(
+
)
;
73.01
min
;
930
(bp) ,
309
(aa)
|
|
Product
|
transcriptional regulator for aaeXAB operon
|
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Operon Name
|
aaeR
|
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Note
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GO_function: GO:0016563 - transcription activator activity; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
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Function
|
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( aaeR )
GO:0003700
;
transcription factor activity ( aaeR )
GO:0006350
;
transcription ( aaeR )
GO:0006355
;
regulation of transcription, DNA-dependent ( aaeR )
|
|
PID
|
1789639
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YHCS_ECOLI
(
P45691
)
|
|
- Protein name
|
Putative HTH-type transcriptional regulator yhcS.
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- Synonyms
|
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- Gene name
|
Name=yhcS; OrderedLocusNames=b3243, c3998, z4602, ECs4116;
|
| Sequences |
Amino acid
FASTA format
|
0001 MERLKRMSVF AKVVEFGSFT AAARQLQMSV SSISQTVSKL EDELQVKLLN RSTRSIGLTE AGRIYYQGCR
0071 RMLHEVQDVH EQLYAFNNTP IGTLRIGCSS TMAQNVLAGL TAKMLKEYPG LSVNLVTGIP APDLIADGLD
0141 VVIRVGALQD SSLFSRRLGA MPMVVCAAKS YLTQYGIPEK PADLSSHSWL EYSVRPDNEF ELIAPEGIST
0211 RLIPQGRFVT NDPMTLVRWL TAGAGIAYVP LMWVINEINR GELEILLPRY QSDPRPVYAL YTEKDKLPLK
0281 VQVVINSLTD YFVEVGKLFQ EMHGRGKEK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGAGCAACAT TGCTGTAGAT TGATATTTAA
-070 TATATTAGCG TAACTGTTAT GCTGTTATCT ATATTATGTG ATCTAAATCA CTTTTAAGTC AGAGTGAATA
0001 atggaacgac taaaacgcat gtcggtgttt gccaaagtag ttgaatttgg ctcttttacc gccgccgcca
0071 gacagctaca gatgagcgtt tcgtccatca gtcagacggt atcaaaactg gaagatgagt tgcaggtaaa
0141 gctgttaaac cgtagcacac gcagcattgg cctgaccgaa gccggtagaa tttactacca gggctgccgt
0211 cgtatgcttc atgaagtgca ggatgttcat gagcaactgt atgccttcaa taacaccccc atcgggacgc
0281 tacgcattgg ctgttcttca actatggcac aaaatgttct cgccgggctg acagccaaaa tgctgaaaga
0351 atacccaggt ttgagcgtca atctggttac cggaattcca gcccccgacc tgattgccga cggtctggat
0421 gtggtgatcc gcgtcggcgc gttgcaggat tccagcctgt tttcccgccg tctgggcgcg atgccaatgg
0491 tggtgtgcgc cgcgaaaagc tatctcacac aatacggcat accggaaaaa cccgccgatt tgagtagtca
0561 ttcatggctt gaatacagcg tgcggcccga caatgaattt gaactgatcg caccggaagg gatctcgact
0631 cgcctgatcc cacaaggaag atttgtgact aatgatccga tgacgctggt gcgctggctg acggcgggtg
0701 ccgggatcgc ctacgtgccg ctgatgtggg tgatcaacga gatcaatcgt ggggagctgg agatcctgct
0771 gccgcgttac cagtcagatc cacgcccggt ttatgcgtta tataccgaaa aagataagct gccgctgaag
0841 gtacaggtcg tgatcaactc gctgacggat tattttgttg aggtcggtaa attgtttcag gagatgcacg
0911 ggcgcgggaa agagaagtaa TTCATATTGT ACTGTTACGT TGTACAAACC TGTGCCAACG GGTTCCCCTC
0981 ACCCTAACCC TCACCCCAAA GGGGCGAGGG GACCGTTCGT GCACGTAGAA
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