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PEC Original Annotations
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Essentiality
|
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Class
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non-essential
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References (PMID)
|
|
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Deletion
|
OCL27
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
nanR
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
nanR
Search strains by all related name:
nanR b3226 ECK3215 f263 JW3195 yhcK
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General information (Go to Linear View: )
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Gene Name
|
nanR
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|
Alternative name
|
b3226,ECK3215,f263,JW3195,yhcK
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|
Location, Length
|
3,371,720 - 3,372,511
(
-
)
;
72.67
min
;
792
(bp) ,
263
(aa)
|
|
Product
|
DNA-binding transcriptional repressor of the nan operon, induced by sialic acid
|
|
Operon Name
|
nanR
|
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Note
|
GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
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Function
|
regulator; Not classified
|
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Gene Ontology
|
GO:0003677
;
DNA binding ( nanR )
GO:0003700
;
transcription factor activity ( nanR )
GO:0005622
;
intracellular ( nanR )
GO:0006350
;
transcription ( nanR )
GO:0006355
;
regulation of transcription, DNA-dependent ( nanR )
GO:0045892
;
negative regulation of transcription, DNA-dependent ( nanR )
|
|
PID
|
1789621
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
NANR_ECOLI
(
P45427
)
|
|
- Protein name
|
Transcriptional regulator nanR.
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- Synonyms
|
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- Gene name
|
Name=nanR; OrderedLocusNames=b3226, SF3262, S3479;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
nanR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, The Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Escherichia Coli
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Transcriptional regulator nanR
|
|
PSI-BLAST
|
Transcriptional regulator nanR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
transcriptional regulator NanR [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
HTH_GNTR_FAMILY
|
| Sequences |
Amino acid
FASTA format
|
0001 MGLMNAFDSQ TEDSSPAIGR NLRSRPLARK KLSEMVEEEL EQMIRRREFG EGEQLPSERE LMAFFNVGRP
0071 SVREALAALK RKGLVQINNG ERARVSRPSA DTIIGELSGM AKDFLSHPGG IAHFEQLRLF FESSLVRYAA
0141 EHATDEQIDL LAKALEINSQ SLDNNAAFIR SDVDFHRVLA EIPGNPIFMA IHVALLDWLI AARPTVTDQA
0211 LHEHNNVSYQ QHIAIVDAIR RHDPDEADRA LQSHLNSVSA TWHAFGQTTN KKK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ggtaatgatg aggcacaaag agaaaaccct
-070 gccattttcc cctactttca atcctgtgat aggatgtcac tgatgatgtt aatcacactg accttacaga
0001 atgggcctta tgaacgcatt tgattcgcaa accgaagatt cttcacctgc aattggtcgc aacttgcgta
0071 gccgcccgct ggcgcgtaaa aaactctccg aaatggtgga agaagagctg gaacagatga tccgccgtcg
0141 tgaatttggc gaaggtgaac aattaccgtc tgaacgcgaa ctgatggcgt tctttaacgt cgggcgtcct
0211 tcggtgcgtg aagcgctggc agcgttaaaa cgcaaaggtc tggtgcaaat aaacaacggc gaacgcgctc
0281 gcgtctcgcg tccttctgcg gacactatca tcggtgagct ttccggcatg gcgaaagatt tcctttctca
0351 tcccggtggg attgcccatt tcgaacaatt acgtctgttc tttgaatcca gtctggtgcg ctatgcggct
0421 gaacatgcca ccgatgagca aatcgatttg ctggcaaaag cactggaaat caacagtcag tcgctggata
0491 acaacgcggc attcattcgt tcagacgttg atttccaccg cgtgctggcg gagatccccg gtaacccaat
0561 cttcatggcg atccacgttg ccctgctcga ctggcttatt gccgcacgcc caacggttac cgatcaggca
0631 ctgcacgaac ataacaacgt tagttatcaa cagcatattg cgatcgttga tgcgatccgc cgtcatgatc
0701 ctgacgaagc cgatcgtgcg ttgcaatcgc atctcaacag cgtctctgct acctggcacg ctttcggtca
0771 gaccaccaac aaaaagaaat aatgccactt tagtgaagca gatcgcatta taagctttct gtatggggtg
0841 ttgcttaatt gatctggtat aacaggtata aaggtatatc gtttatcaga ca
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