|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL29,30-6 (AK4-11 / BK5-11)
(D)
,
OCL29-6
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yhbY
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yhbY
Search strains by all related name:
yhbY b3180 ECK3169 JW3147 o97
|
General information (Go to Linear View: )
|
|
Gene Name
|
yhbY
|
|
Alternative name
|
b3180,ECK3169,JW3147,o97
|
|
Location, Length
|
3,325,812 - 3,326,105
(
+
)
;
71.68
min
;
294
(bp) ,
97
(aa)
|
|
Product
|
RNA binding protein associated with pre-50S ribosomal subunits
|
|
Operon Name
|
yhbY
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0003723
;
RNA binding ( yhbY )
|
|
PID
|
1789570
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YHBY_ECOLI
(
P42550
)
|
|
- Protein name
|
UPF0044 protein yhbY.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b3180, c3937, z4542, ECs4059, SF3220, S3438;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yhbY
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of E. Coli Yhby
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0044 protein yhbY
|
|
PSI-BLAST
|
UPF0044 protein HI1333
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z4542 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
MYRISTYL
UPF0044
|
| Sequences |
Amino acid
FASTA format
|
0001 MNLSTKQKQH LKGLAHPLKP VVLLGSNGLT EGVLAEIEQA LEHHELIKVK IATEDRETKT LIVEAIVRET
0071 GACNVQVIGK TLVLYRPTKE RKISLPR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCGTAACCAA TTGCGTAAAT TTTTACGCGC
-070 CTATTTGGTG ATATATGGGA GATGGCGGTA GAATGACCCG TTTTCAATCC CAACGTAAGC AAAAAATACG
0001 atgaatctga gtactaaaca aaaacagcac ctgaaaggtc tggcacatcc gctcaagcca gttgttctgc
0071 ttggcagtaa tggtttgacc gaaggggtgc tggccgagat tgaacaagcg ttagagcacc atgaactcat
0141 caaggtgaaa atcgccaccg aagatcgcga aactaaaacc ttgatcgtgg aagctatcgt gcgcgaaacc
0211 ggcgcctgta atgtacaggt catcggtaaa acgctggtgc tttatcgccc aactaaagaa cgtaaaatct
0281 cgctgccacg ctaaGATTAT CCTAAAGTTA CACACATTTG CTGTGTAAAA CGAGGGGTTT TCCGCAGGCA
0351 GGAGAGCAAA ATGCCACGCT CTGTTCGTTG ATAAAAGGCC GCAT
|
