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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
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OCL29,30-6 (AK4-11 / BK5-11)
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
rpsO
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Related strains
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Strains Search
|
Search strains by gene name:
rpsO
Search strains by all related name:
rpsO b3165 ECK3154 f89 JW3134 secC
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General information (Go to Linear View: )
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Gene Name
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rpsO
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Alternative name
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b3165,ECK3154,f89,JW3134,secC
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Location, Length
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3,309,437 - 3,309,706
(
-
)
;
71.33
min
;
270
(bp) ,
89
(aa)
|
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Product
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30S ribosomal subunit protein S15
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Operon Name
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metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp
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Note
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GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation
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Function
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structural component; Ribosomal proteins - synthesis, modification
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Gene Ontology
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GO:0003723
;
RNA binding ( rpsO )
GO:0003735
;
structural constituent of ribosome ( rpsO )
GO:0005622
;
intracellular ( rpsO )
GO:0005840
;
ribosome ( rpsO )
GO:0006412
;
translation ( rpsO )
GO:0019843
;
rRNA binding ( rpsO )
GO:0030529
;
ribonucleoprotein complex ( rpsO )
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PID
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1789556
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EC number
(KEGG Pathway)
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Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
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EcoGene
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rpsO
(
EG10914
)
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Number of removed
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1 aa cleaved
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SWISS-PROT
(
Show details
[
1
more]
)
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Entry name(Acc.no)
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RS15_ECOLI
(
P02371
)
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- Protein name
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30S ribosomal protein S15.
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- Synonyms
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- Gene name
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OrderedLocusNames=b3165, c3921, SF3206, S3423;
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MMBR References
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Biochem Cell Biol. 1995;73(11-12):1131-40.
A pseudoknot is required for efficient translational initiation and regulation of the Escherichia coli rpsO gene coding for ribosomal protein S15.
Ehresmann C, Philippe C, Westhof E, Benard L, Portier C, Ehresmann B.
(
8722030
)
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Gene. 1985;40(1):15-22.
Promoter activity and transcript mapping in the regulatory region for genes encoding ribosomal protein S15 and polynucleotide phosphorylase of Escherichia coli.
Evans S, Dennis PP.
(
3005122
)
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Cell. 1984;38(1):211-7.
The product of gene secC is involved in the synthesis of exported proteins in E. coli.
Ferro-Novick S, Honma M, Beckwith J.
(
6088066
)
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J Bacteriol. 1979;138(3):832-8.
Genes coding for ribosomal proteins S15, L21, and L27 map near argG in Escherichia coli.
Kitakawa M, Dabbs ER, Isono K.
(
378941
)
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J Bacteriol. 1950;59(2):211-5.
The selection of genetic recombinations with bacterial growth inhibitors.
Lederberg J.
(
15421949
)
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Proc Natl Acad Sci U S A. 1982;79:5033-5037
Cloning and mapping of a gene for translation initiation factor 1F2 in Escherichia coli.
Plumbridge, J. A., J. G. Howe, M. Springer, D. Touati-Schwartz, J. W. B. Hershey, and M. Grunberg-Manago.
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Gene. 1982;18(3):261-6.
Physical localisation and direction of transcription of the structural gene for Escherichia coli ribosomal protein S15.
Portier C.
(
6290330
)
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Nucleic Acids Res. 1984;12:6091-6102
Expression of the rspO and pnp genes: structural analysis of a DNA fragment carrying their control regions.
Portier, C., and P. Regnier.
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J Mol Biol. 1986;187(1):23-32.
Initiation, attenuation and RNase III processing of transcripts from the Escherichia coli operon encoding ribosomal protein S15 and polynucleotide phosphorylase.
Regnier P, Portier C.
(
3007765
)
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Nucleic Acids Res. 1988;16:10803-10816
The existence of two genes between infB and rpsO in the Escherichia coli genome: DNA sequencing and S1 nuclease mapping.
Sands, J. F., P. Regnier, H. S. Cummings, M. Grunberg-Manago, and J. W. Hershey.
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Nucleic Acids Res. 1985;13:7289-7297
Attenuation and processing of RNA from the rpsO-pnp transcription unit of Escherichia coli.
Takata, R., T. Mukai, and K. Hori.
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Mol Gen Genet. 1984;197(2):225-9.
Nucleotide sequence of the gene for Escherichia coli ribosomal protein S15 (rpsO).
Takata R, Mukai T, Aoyagi M, Hori K.
(
6394953
)
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| Sequences |
Amino acid
FASTA format
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0001 MSLSTEATAK IVSEFGRDAN DTGSTEVQVA LLTAQINHLQ GHFAEHKKDH HSRRGLLRMV SQRRKLLDYL
0071 KRKDVARYTQ LIERLGLRR
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttaacgtcgc gtaaattgtt taacactttg
-070 cgtaacgtac actgggatcg ctgaattaga gatcggcgtc ctttcattct atatactttg gagttttaaa
0001 atgtctctaa gtactgaagc aacagctaaa atcgtttctg agtttggtcg tgacgcaaac gacaccggtt
0071 ctaccgaagt tcaggtagca ctgctgactg cacagatcaa ccacctgcag ggccactttg cagagcacaa
0141 aaaagatcac cacagccgtc gtggtctgct gcgcatggtt tctcagcgtc gtaaactgct cgactacctg
0211 aaacgtaaag acgtagcacg ttacacccag ctcatcgagc gcctgggtct gcgtcgctaa ttcttgcgag
0281 tttcagaaaa gggggcctga gtggcccctt ttttcaagct gacggcagca attcactgga aactaatgta
0351 ttgttgctat gaatgatctt
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