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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCL31
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
garD
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Related strains
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Strains Search
|
Search strains by gene name:
garD
Search strains by all related name:
garD b3128 ECK3116 JW3097 o523 yhaG
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General information (Go to Linear View: )
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Gene Name
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garD
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Alternative name
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b3128,ECK3116,JW3097,o523,yhaG
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Location, Length
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3,273,304 - 3,274,875
(
+
)
;
70.55
min
;
1572
(bp) ,
523
(aa)
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Product
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(D)-galactarate dehydrogenase
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Operon Name
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garD
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Note
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GO_process: GO:0016052 - carbohydrate catabolic process
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Function
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1.1.1 metabolism; carbon utilization; carbon compounds
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Gene Ontology
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GO:0008867
;
galactarate dehydratase activity ( garD )
GO:0016829
;
lyase activity ( garD )
GO:0016836
;
hydro-lyase activity ( garD )
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PID
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1789516
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EC number
(KEGG Pathway)
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4.2.1.42
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
GARD_ECOLI
(
P39829
)
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- Protein name
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D-galactarate dehydratase
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- Synonyms
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EC 4.2.1.42, GalcD
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- Gene name
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Name=garD; OrderedLocusNames=b3128;
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| Sequences |
Amino acid
FASTA format
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0001 MANIEIRQET PTAFYIKVHD TDNVAIIVND NGLKAGTRFP DGLELIEHIP QGHKVALLDI PANGEIIRYG
0071 EVIGYAVRAI PRGSWIDESM VVLPEAPPLH TLPLATKVPE PLPPLEGYTF EGYRNADGSV GTKNLLGITT
0141 SVHCVAGVVD YVVKIIERDL LPKYPNVDGV VGLNHLYGCG VAINAPAAVV PIRTIHNISL NPNFGGEVMV
0211 IGLGCEKLQP ERLLTGTDDV QAIPVESASI VSLQDEKHVG FQSMVEDILQ IAERHLQKLN QRQRETCPAS
0281 ELVVGMQCGG SDAFSGVTAN PAVGYASDLL VRCGATVMFS EVTEVRDAIH LLTPRAVNEE VGKRLLEEME
0351 WYDNYLNMGK TDRSANPSPG NKKGGLANVV EKALGSIAKS GKSAIVEVLS PGQRPTKRGL IYAATPASDF
0421 VCGTQQVASG ITVQVFTTGR GTPYGLMAVP VIKMATRTEL ANRWFDLMDI NAGTIATGEE TIEEVGWKLF
0491 HFILDVASGK KKTFSDQWGL HNQLAVFNPA PVT
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTTAAACTCC TGACATTCTT ATTTCACCCA
-070 ATGAAGTCAT TTATTTTTAA ATGAGACCAG GTCCTCATTT TAATAACCCC TGGCTGGAGA ATATTGCACA
0001 atggccaaca tcgaaatcag acaagaaacg ccaactgcgt tttatataaa agttcacgac acagataatg
0071 tggcaattat tgttaatgat aatggcctga aagcaggaac gcgttttccg gatgggctgg aattaattga
0141 acatattccc caggggcata aagtcgcatt gctggacatt ccggctaatg gtgaaattat tcgttatggc
0211 gaagtgattg gttacgccgt gcgtgcaatc ccacgcggaa gctggatcga cgaatcaatg gttgtactac
0281 cggaagcgcc gccgttacac acgctgccac tggcaaccaa agtcccggaa cccttaccgc cgctggaagg
0351 atacaccttt gagggctatc gcaatgccga tggcagcgtg ggcaccaaaa acctgctcgg tatcaccacc
0421 agcgtccact gtgtggcagg cgtggtggac tatgtagtaa aaatcattga acgcgatctg ctaccgaaat
0491 acccgaacgt cgatggcgtg gtggggctga atcatttgta cggttgtggc gtggcgatta acgcaccggc
0561 ggcagttgta cctatccgta ccattcacaa tatttcgctg aatcctaact ttggcggcga agtaatggtg
0631 attggcctgg gttgtgaaaa gttgcagcct gagcgcctgc tgactggaac ggatgatgtg caagctattc
0701 cagtagaaag cgccagcatt gtcagtttgc aggatgaaaa gcatgtcggt tttcagtcca tggtcgagga
0771 tattttgcag atcgccgaac gccatctaca aaaactgaat caacggcagc gagaaacctg cccggcttca
0841 gaactggtcg ttggtatgca gtgcggtggc agcgatgcgt tttctggtgt aacggcaaac ccggcggttg
0911 gctatgcgtc tgatctactg gtgcgctgcg gcgcaacggt gatgttttca gaagtaacgg aagtgcgtga
0981 cgcgatccat ctgctgacac cacgcgcagt gaacgaagag gtcggcaaac ggctgctgga ggagatggag
1051 tggtacgata actatctcaa tatgggaaaa accgaccgca gcgccaaccc ttcgccgggc aacaagaaag
1121 gcggtctggc aaacgtggta gagaaggcac tcggctccat tgctaaatcg ggtaaaagcg caattgttga
1191 agtgctgtcg cccggtcaac gcccgactaa acgcggatta atttacgccg cgacgccagc cagcgatttt
1261 gtctgtggca cgcaacaggt ggcttcgggt atcacagtgc aagtgtttac gaccggtcgt ggtacgccgt
1331 acggcctgat ggcggtaccc gtcattaaaa tggcaacccg caccgagctg gcgaaccgct ggtttgattt
1401 aatggatatt aatgcgggca ccatcgctac cggcgaagaa actattgaag aggtgggctg gaagttgttc
1471 cactttattc tcgacgtcgc cagcgggaag aagaaaacct tctcggatca atgggggctg cataaccagc
1541 tggcggtgtt taacccggca ccggtgacct gaTTTCTTTT GGAACGTCCC TCGCAAAACA TGGCCTTAGT
1611 GCCATGTTTT TATTGTTTAA AGCCCCCACG TCCATTAATA ATGCATTTGC ATTACCTTAG TT
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