|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(PC3)
,
OCL36 (PC3)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygiC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygiC
Search strains by all related name:
ygiC b3038 ECK3029 JW3006
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygiC
|
|
Alternative name
|
b3038,ECK3029,JW3006
|
|
Location, Length
|
3,178,443 - 3,179,603
(
+
)
;
68.51
min
;
1161
(bp) ,
386
(aa)
|
|
Product
|
glutathionylspermidine synthase homolog
|
|
Operon Name
|
tolC-ygiABC
|
|
Note
|
putative synthetase/amidase
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1789416
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGIC_ECOLI
(
P24196
)
|
|
- Protein name
|
Hypothetical protein ygiC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygiC; OrderedLocusNames=b3038, c3784, z4395, ECs3926;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygiC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, E. Coli Bifunctional Glutathionylspermidine SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygiC
|
|
PSI-BLAST
|
Hypothetical protein ygiC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative synthetase/amidase [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MERVSITERP DWREKAHEYG FNFHTMYGEP YWCEDAYYKL TLAQVEKLEE VTAELHQMCL KVVEKVIASD
0071 ELMTKFRIPK HTWSFVRQSW LTHQPSLYSR LDLAWDGTGE PKLLENNADT PTSLYEAAFF QWIWLEDQLN
0141 AGNLPEGSDQ FNSLQEKLID RFVELREQYG FQLLHLTCCR DTVEDRGTIQ YLQDCATEAE IATEFLYIDD
0211 IGLGEKGQFT DLQDQVISNL FKLYPWEFML REMFSTKLED AGVRWLEPAW KSIISNKALL PLLWEMFPNH
0281 PNLLPAYFAE DDHPQMEKYV VKPIFSREGA NVSIIENGKT IEAAEGPYGE EGMIVQQFHP LPKFGDSYML
0351 IGSWLVNDQP AGIGIREDRA LITQDMSRFY PHIFVE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCGTTACCCG TGGCGGTTTT GGTGAATCTG
-070 TTGCCAAACA AAGCACTATG CAGCGTAGTG CAACCGGTAC CTCTTCTCGT TCAATGGGTG GCTGATACCG
0001 atggaaagag tcagtattac cgagcgcccg gactggcgtg agaaagccca cgaatacggt ttcaattttc
0071 acaccatgta cggcgagccg tactggtgtg aagatgctta ctacaagttg accctcgccc aggttgaaaa
0141 gctggaagaa gtcaccgccg aactgcacca gatgtgcctg aaagtggtgg aaaaagtgat cgccagcgat
0211 gagctgatga ccaaattccg cattccaaaa cacacctgga gttttgtgcg ccagtcatgg ctgacgcacc
0281 agccatcgct ttattcgcgt cttgatctgg cgtgggatgg cactggtgaa cctaaacttc tggaaaataa
0351 cgccgatacg ccaacgtcac tatacgaggc ggcgttcttt cagtggatct ggctggaaga tcagcttaac
0421 gccggtaact tgccggaggg cagcgaccag tttaacagtc tgcaagaaaa actgatcgat cgcttcgttg
0491 agctgcgtga acagtatggc ttccagttgc tgcatctcac ctgctgtcgc gacacggtgg aagatcgcgg
0561 aaccattcag tatttgcagg actgcgcaac ggaagctgaa attgctactg agttcctcta catcgatgat
0631 atcgggttag gtgaaaaagg tcagttcacg gatttacagg atcaggtaat ttccaacctg ttcaaactgt
0701 atccgtggga atttatgttg cgtgagatgt tctcaaccaa gctggaggat gcaggcgtac gctggctgga
0771 accggcgtgg aagagcatta tctccaacaa ggcacttcta ccgctactgt gggagatgtt cccgaatcac
0841 ccgaacctgc tgcccgctta ttttgcggaa gatgatcatc cgcaaatgga aaaatatgtg gttaaaccga
0911 tcttctcccg tgaaggcgca aacgtgtcga tcattgagaa cggcaaaacc attgaagcag cggaaggtcc
0981 gtatggcgaa gaagggatga ttgttcagca attccacccg ttaccgaaat tcggcgacag ctatatgctg
1051 attggtagct ggctggtgaa cgatcaaccc gccggaattg gcattcgtga agaccgtgca ttgatcaccc
1121 aggatatgtc tcggttttat ccacatattt ttgttgaata aGCCACGATA CCGGATGGCA CTCGCCATCC
1191 GGTAATTGTT AGCCTATCTG CACCGACAGC ATACTCAGGC TGCCCATTTC TATACCCTCA ACCGGAATGG
1261 T
|
