|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(PC3)
,
OCL36 (PC3)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygiB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygiB
Search strains by all related name:
ygiB b3036 b3037 ECK3028 JW5927 ygiA
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygiB
|
|
Alternative name
|
b3036,b3037,ECK3028,JW5927,ygiA
|
|
Location, Length
|
3,177,766 - 3,178,437
(
+
)
;
68.49
min
;
672
(bp) ,
223
(aa)
|
|
Product
|
conserved protein, UPF0441 family
|
|
Operon Name
|
tolC-ygiABC
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
145693179
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
Q79CP2
(
Q79CP2
;
Q9Z363
)
|
|
- Protein name
|
ORF_o87; alternate name ygiA; urf of X00016
|
|
- Synonyms
|
TolC outer membrane protein, Hypothetical protein ygiA
|
|
- Gene name
|
Name=ygiA; OrderedLocusNames=b3036;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygiA
(
homologous genes of other bacterias
)
ygiB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative uncharacterized protein ygiA
|
|
PSI-BLAST
|
Putative uncharacterized protein ygiA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b3036 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MKRTKSIRHA SFRKNWSARH LTPVALAVAT VFMLAGCEKS DETVSLYQNA DDCSAANPGK SAECTTAYNN
0071 ALKEAERTAP KYATREDCVA EFGEGQCQQA PAQAGMAPEN QAQAQQSSGS FWMPLMAGYM MGRLMGGGAG
0141 FAQQPLFSSK NPASPAYGKY TDATGKNYGA AQPGRTMTVP KTAMAPKPAT TTTVTRGGFG ESVAKQSTMQ
0211 RSATGTSSRS MGG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GATACGGGTT ATCTGCCGCA TTCTTCCCCC
-070 TTCTCGCTTC AATTTCGACC AGCCATCCTC TATTCTGATG GGTATTTACC ACTGGTCCCG GAAGACAAAA
0001 atgaaacgga caaaatccat acgccacgca tcgttccgca aaaactggag cgcacgccat ctgacaccag
0071 tcgctctcgc ggttgccact gtttttatgc tggctggctg tgaaaagagt gatgaaacag tgtctctcta
0141 tcaaaatgct gacgactgtt cagctgcaaa cccaggcaaa agcgccgaat gtaccaccgc gtacaacaat
0211 gcgctgaaag aagccgaacg tactgcgccg aaatacgcca cccgtgaaga ctgtgttgct gaatttggtg
0281 aaggtcagtg ccagcaggca ccagcccagg ctggcatggc accagaaaac caggcgcagg cccagcaatc
0351 cagcgggagt ttctggatgc cgctgatggc cggttacatg atggggcgtc tgatgggcgg cggcgcggga
0421 tttgcacagc agccgctgtt ctcctcgaaa aacccagcca gtccggctta cggtaaatat accgacgcga
0491 cgggtaaaaa ctatggcgca gcccagccag gccgcaccat gaccgtaccg aagacggcaa tggcaccaaa
0561 accggcgacc accactaccg ttacccgtgg cggttttggt gaatctgttg ccaaacaaag cactatgcag
0631 cgtagtgcaa ccggtacctc ttctcgttca atgggtggct gaTACCGATG GAAAGAGTCA GTATTACCGA
0701 GCGCCCGGAC TGGCGTGAGA AAGCCCACGA ATACGGTTTC AATTTTCACA CCATGTACGG CGAGCCGTAC
0771 TG
|
