|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL40
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
scpB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
scpB
Search strains by all related name:
scpB b2919 ECK2915 JW2886 mmcD o275 ygfG
|
General information (Go to Linear View: )
|
|
Gene Name
|
scpB
|
|
Alternative name
|
b2919,ECK2915,JW2886,mmcD,o275,ygfG
|
|
Location, Length
|
3,062,015 - 3,062,800
(
+
)
;
66.00
min
;
786
(bp) ,
261
(aa)
|
|
Product
|
methylmalonyl-CoA decarboxylase, biotin-independent
|
|
Operon Name
|
scpA-argK-scpBC
|
|
Note
|
putative enzyme
|
|
Function
|
enzyme; Not classified
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( mmcD )
GO:0004492
;
methylmalonyl-CoA decarboxylase activity ( mmcD )
GO:0008152
;
metabolic process ( mmcD )
GO:0016829
;
lyase activity ( mmcD )
|
|
PID
|
87082183
|
EC number
(KEGG Pathway)
|
4.1.1.41
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YGFG_ECOLI
(
P52045
;
P76643
)
|
|
- Protein name
|
Hypothetical protein ygfG.
|
|
- Synonyms
|
|
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- Gene name
|
Name=ygfG; OrderedLocusNames=b2919;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygfG
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Methylmalonyl-CoA decarboxylase
|
|
PSI-BLAST
|
Methylmalonyl-CoA decarboxylase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative enzyme [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
ENOYL_COA_HYDRATASE
|
| Sequences |
Amino acid
FASTA format
|
0001 MSYQYVNVVT INKVAVIEFN YGRKLNALSK VFIDDLMQAL SDLNRPEIRC IILRAPSGSK VFSAGHDIHE
0071 LPSGGRDPLS YDDPLRQITR MIQKFPKPII SMVEGSVWGG AFEMIMSSDL IIAASTSTFS MTPVNLGVPY
0141 NLVGIHNLTR DAGFHIVKEL IFTASPITAQ RALAVGILNH VVEVEELEDF TLQMAHHISE KAPLAIAVIK
0211 EELRVLGEAH TMNSDEFERI QGMRRAVYDS EDYQEGMNAF LEKRKPNFVG H
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ACGCTTTTAG CGGTCAAAAA CAATACGCTC
-070 TCACCGCGCA CCGGCCTGCG GCAGCTCAGT GAATTTATCC AGACGCAATA TTTTGATTAA AGGAATTTTT
0001 atgtcttatc agtatgttaa cgttgtcact atcaacaaag tggcggtcat tgagtttaac tatggccgaa
0071 aacttaatgc cttaagtaaa gtctttattg atgatcttat gcaggcgtta agcgatctca accggccgga
0141 aattcgctgt atcattttgc gcgcaccgag tggatccaaa gtcttctccg caggtcacga tattcacgaa
0211 ctgccgtctg gcggtcgcga tccgctctcc tatgatgatc cattgcgtca aatcacccgc atgatccaaa
0281 aattcccgaa accgatcatt tcgatggtgg aaggtagtgt ttggggtggc gcatttgaaa tgatcatgag
0351 ttccgatctg atcatcgccg ccagtacctc aaccttctca atgacgcctg taaacctcgg cgtcccgtat
0421 aacctggtcg gcattcacaa cctgacccgc gacgcgggct tccacattgt caaagagctg atttttaccg
0491 cttcgccaat caccgcccag cgcgcgctgg ctgtcggcat cctcaaccat gttgtggaag tggaagaact
0561 ggaagatttc accttacaaa tggcgcacca catctctgag aaagcgccgt tagccattgc cgttatcaaa
0631 gaagagctgc gtgtactggg cgaagcacac accatgaact ccgatgaatt tgaacgtatt caggggatgc
0701 gccgcgcggt gtatgacagc gaagattacc aggaagggat gaacgctttc ctcgaaaaac gtaaacctaa
0771 tttcgttggt cattaaTCCC TGCGAACGAA GGAGTAAAAA TGGAAACTCA GTGGACAAGG ATGACCGCCA
0841 ATGAAGCGGC AGAAATTATC CAGCATAACG ACATGGTGGC ATTTAG
|
