|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(argA-thyA)232
,
OCL44,45-11
(D)
,
OCL44,45-15 (AK1-9 / BK2-9)
(D)
,
OCL44,45-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ppdA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ppdA
Search strains by all related name:
ppdA b2826 ECK2822 JW2794
|
General information (Go to Linear View: )
|
|
Gene Name
|
ppdA
|
|
Alternative name
|
b2826,ECK2822,JW2794
|
|
Location, Length
|
2,961,729 - 2,962,199
(
-
)
;
63.83
min
;
471
(bp) ,
156
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
ppdAB-ygdB-ppdC-recC
|
|
Note
|
prepilin peptidase dependent protein A; GO_component: GO:0009289 - pilus; GO_process: GO:0009101 - glycoprotein biosynthetic process
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1789190
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
PPDA_ECOLI
(
P33554
;
Q59379
)
|
|
- Protein name
|
Prepilin peptidase dependent protein A precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ppdA; OrderedLocusNames=b2826;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ppdA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Prepilin peptidase-dependent protein A precursor
|
|
PSI-BLAST
|
Prepilin peptidase-dependent protein A precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2826 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_NTER_METHYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MKTQRGYTLI ETLVAMLILV MLSASGLYGW QYWQQSQRLW QTASQARDYL LYLREDANWH NRDHSISVIR
0071 EGTLWCLVSS AAGANTCHGS SPLVFVPRWP EVEMSDLTPS LAFFGLRNTA WAGHIRFKNS TGEWWLVVSP
0141 WGRLRLCQQG ETEGCL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 attttgcaac gtcctgcaac ggcgtaaata
-070 gtccggaaga tgcgccgaag aaatagaaac tggccctcgt ctttttttct cctcgctcca tactgccggc
0001 atgaaaacac aacgtggtta tacgctgatt gaaacgctgg tcgcgatgct gattttggtc atgctaagcg
0071 caagtggact ctatggctgg caatactggc agcagtcgca acggctatgg caaaccgcca gccaggcgcg
0141 ggactatttg ctctatttac gtgaagatgc caactggcat aaccgcgacc acagtatcag cgttatcagg
0211 gaggggacgt tatggtgcct tgtgagttcc gctgctgggg ccaatacctg tcatggcagt tcaccattgg
0281 tctttgtgcc acgctggccc gaagtcgaaa tgagcgacct gacaccttcg cttgctttct ttggcctgcg
0351 caataccgca tgggccgggc atattcgctt caaaaactca acgggcgagt ggtggctggt ggtttcgccg
0421 tggggaagac tccggctttg tcagcaagga gaaacagaag gatgcctgta aaagagcaag gtttttctct
0491 gctggaagtg ttgattgcta tggcgatcag tagcgtattg ttgctggggg cggcacgctt tctgcctgcg
0561 ttacagcgtg a
|
