|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(argA-thyA)232
,
OCL44,45-11
(D)
,
OCL44,45-15 (AK1-9 / BK2-9)
(D)
,
OCL44,45-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ppdB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ppdB
Search strains by all related name:
ppdB b2825 ECK2821 JW5451 ygdC
|
General information (Go to Linear View: )
|
|
Gene Name
|
ppdB
|
|
Alternative name
|
b2825,ECK2821,JW5451,ygdC
|
|
Location, Length
|
2,961,175 - 2,961,738
(
-
)
;
63.82
min
;
564
(bp) ,
187
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
ppdAB-ygdB-ppdC-recC
|
|
Note
|
prepilin peptidase dependent protein B; GO_component: GO:0009289 - pilus; GO_process: GO:0009101 - glycoprotein biosynthetic process
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1789189
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
PPDB_ECOLI
(
P08371
)
|
|
- Protein name
|
Prepilin peptidase dependent protein B precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ppdB; OrderedLocusNames=b2825;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ppdB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Prepilin peptidase-dependent protein B precursor
|
|
PSI-BLAST
|
Prepilin peptidase-dependent protein B precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
prepilin peptidase dependent protein B precursor [Escherichia coli B]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_NTER_METHYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MPVKEQGFSL LEVLIAMAIS SVLLLGAARF LPALQRESLT STRKLALEDE IWLRVFTVAK HLQRAGYCHG
0071 ICTGEGLEIV GQGDCVIVQW DANSNGIWDR EPVKESDQIG FRLKEHVLET LRGATSCEGK GWDKVTNPDA
0141 IIIDTFQVVR QDVSGFSPVL TVNMRAASKS EPQTVVNASY SVTGFNL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gggccgggca tattcgcttc aaaaactcaa
-070 cgggcgagtg gtggctggtg gtttcgccgt ggggaagact ccggctttgt cagcaaggag aaacagaagg
0001 atgcctgtaa aagagcaagg tttttctctg ctggaagtgt tgattgctat ggcgatcagt agcgtattgt
0071 tgctgggggc ggcacgcttt ctgcctgcgt tacagcgtga aagtttaacg agcacccgta agctggcgct
0141 ggaagatgaa atctggctgc gggtatttac cgtcgcgaag catctccaga gggcgggtta ttgtcatggc
0211 atctgtaccg gcgaagggct ggaaattgtc ggacagggtg actgtgtcat tgtgcagtgg gatgcgaaca
0281 gtaacggtat ctgggatcgc gaaccggtaa aagagtccga ccagattgga tttcgtctga aggagcatgt
0351 gctggaaacg ctacgcggtg cgacatcctg tgaaggtaag ggctgggata aagtcactaa tccggatgcc
0421 atcattatcg acacttttca ggtcgtacgt caggatgtca gcggcttctc gccggtgttg acggttaata
0491 tgcgtgctgc cagtaagtct gaaccgcaaa ccgtggtgaa tgccagctat agcgtgacag gattcaacct
0561 gtgaaccgcg aaaagggtgt ttcgtcactg gctctggtcc tgatgctgct ggttttgggt agtttgctat
0631 tacaaggaat gagccaacag gatcgcagtt ttgc
|
