|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(argA-thyA)232
,
OCL44,45-11
(D)
,
OCL44,45-15 (AK1-9 / BK2-9)
(D)
,
OCL44,45-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygdB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygdB
Search strains by all related name:
ygdB b2824 ECK2820 JW5450
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygdB
|
|
Alternative name
|
b2824,ECK2820,JW5450
|
|
Location, Length
|
2,960,771 - 2,961,178
(
-
)
;
63.81
min
;
408
(bp) ,
135
(aa)
|
|
Product
|
conserved protein, DUF2509 family
|
|
Operon Name
|
ppdAB-ygdB-ppdC-recC
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
87082164
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YGDB_ECOLI
(
P08370
)
|
|
- Protein name
|
Hypothetical protein ygdB precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygdB; OrderedLocusNames=b2824;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygdB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygdB precursor
|
|
PSI-BLAST
|
Hypothetical protein ygdB precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MNREKGVSSL ALVLMLLVLG SLLLQGMSQQ DRSFASRVSM ESQSLRRQAI VQSALAWGKM HCWQTQPAVQ
0071 CSQYAETDAQ VCLRLLADNE ALLIAGYEGV SLWRTGEVID GNIVFSPRGW SDFCPLKERA LCQLP
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gcggcttctc gccggtgttg acggttaata
-070 tgcgtgctgc cagtaagtct gaaccgcaaa ccgtggtgaa tgccagctat agcgtgacag gattcaacct
0001 gtgaaccgcg aaaagggtgt ttcgtcactg gctctggtcc tgatgctgct ggttttgggt agtttgctat
0071 tacaaggaat gagccaacag gatcgcagtt ttgcctctcg cgtgagcatg gaaagtcagt cattgcgccg
0141 ccaggccatc gttcagtcgg cgctggcgtg gggaaaaatg cactgctggc agacgcagcc agcagttcag
0211 tgctcgcagt acgctgaaac cgatgcccag gtttgtttgc gtttactggc agataatgaa gccttattga
0281 ttgccggtta tgaaggcgtt tcgttgtggc gaacaggcga agtcattgat ggaaacattg ttttttcgcc
0351 acgcggctgg agcgattttt gtccgctgaa agagagggcg ttatgtcagc ttccctgaag aatcaacaag
0421 gctttagcct gccggaggta atgttggcga tggtgttgat ggtgatgatt gtcactgcgt tatcgggttt
0491 ccagcgaaca ttaatgaa
|
