|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
DE(argA-thyA)232
,
OCL44,45-11
(D)
,
OCL44,45-15 (AK1-9 / BK2-9)
(D)
,
OCL44,45-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ppdC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ppdC
Search strains by all related name:
ppdC b2823 ECK2819 JW2791 ygdA
|
General information (Go to Linear View: )
|
|
Gene Name
|
ppdC
|
|
Alternative name
|
b2823,ECK2819,JW2791,ygdA
|
|
Location, Length
|
2,960,463 - 2,960,786
(
-
)
;
63.81
min
;
324
(bp) ,
107
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
ppdAB-ygdB-ppdC-recC
|
|
Note
|
prepilin peptidase dependent protein C; GO_component: GO:0009289 - pilus; GO_process: GO:0009101 - glycoprotein biosynthetic process
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1789187
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
PPDC_ECOLI
(
P08372
)
|
|
- Protein name
|
Prepilin peptidase dependent protein C precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ppdC; OrderedLocusNames=b2823;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ppdC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Prepilin peptidase-dependent protein C precursor
|
|
PSI-BLAST
|
Prepilin peptidase-dependent protein C precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2823 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_NTER_METHYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MSASLKNQQG FSLPEVMLAM VLMVMIVTAL SGFQRTLMNS LASRNQYQQL WRHGWQQTQL RAISPPANWQ
0071 VNRMQTSQAG CVSISVTLVS PGGREGEMTR LHCPNRQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aaggcgtttc gttgtggcga acaggcgaag
-070 tcattgatgg aaacattgtt ttttcgccac gcggctggag cgatttttgt ccgctgaaag agagggcgtt
0001 atgtcagctt ccctgaagaa tcaacaaggc tttagcctgc cggaggtaat gttggcgatg gtgttgatgg
0071 tgatgattgt cactgcgtta tcgggtttcc agcgaacatt aatgaacagt cttgccagca gaaaccagta
0141 ccaacagctc tggcggcatg gctggcagca aacgcaactg cgcgcgattt cgccacctgc caactggcag
0211 gtcaaccgaa tgcagacatc gcaggcggga tgtgtcagca tcagcgttac gctagtttca cccgggggca
0281 gagaaggcga gatgacccgc ctgcattgcc cgaatcgtca gtagtcagga gccgctatgt taagggtcta
0351 ccattccaat cgtctggacg tgctggaagc gttgatggag tttattgtcg aacgcgaacg gctggacgat
0421 cctt
|
