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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Deletion
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LD3-18-1
(LD)
,
DE(relA-argA)216
,
OCL44,45-1
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
sdaC
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Related strains
|
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Strains Search
|
Search strains by gene name:
sdaC
Search strains by all related name:
sdaC b2796 dcrA ECK2791 JW2767
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General information (Go to Linear View: )
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Gene Name
|
sdaC
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Alternative name
|
b2796,dcrA,ECK2791,JW2767
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Location, Length
|
2,926,251 - 2,927,540
(
+
)
;
63.07
min
;
1290
(bp) ,
429
(aa)
|
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Product
|
putative serine transporter
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Operon Name
|
sdaCB
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Note
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probable serine transporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006564 - L-serine biosynthetic process
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Function
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putative transport; Transport of small molecules: Amino acids, amines
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Gene Ontology
|
GO:0005215
;
transporter activity ( sdaC )
GO:0005886
;
plasma membrane ( sdaC )
GO:0006810
;
transport ( sdaC )
GO:0016020
;
membrane ( sdaC )
GO:0016021
;
integral to membrane ( sdaC )
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PID
|
1789160
|
EC number
(KEGG Pathway)
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|
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SWISS-PROT
(
Show details
[
1
more]
)
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Entry name(Acc.no)
|
SDAC_ECOLI
(
P36559
)
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- Protein name
|
Serine transporter.
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- Synonyms
|
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- Gene name
|
Name=sdaC; Synonyms=dcrA; OrderedLocusNames=b2796, z4113, ECs3656;
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Homology Analysis
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BLAST
|
|
Bacteria
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GTOP
|
sdaC
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
|
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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Serine transporter
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PSI-BLAST
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Probable potassium transporter 2
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|
nr
(database updated :
2007.02.20
)
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BLAST
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COG0814: Amino acid permeases [Shigella boydii BS512]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
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MMBR References
|
J Bacteriol. 1996;178:5309-5315
Genetic control of the resistance to phage C1 of Escherichia coli K-12.
Likhacheva, N. A., V. V. Samsonov, V. V. Samsonov, and S. P. Sineoky.
|
Eur J Biochem. 1994;222:901-907
Sequencing and characterization of the sdaC gene and identification of the sdaCB operon in Escherichia coli K12.
Shao, Z., R. T. Lin, and E. B. Newman.
|
J Bacteriol. 1991;173(8):2473-80.
A novel L-serine deaminase activity in Escherichia coli K-12.
Su H, Newman EB.
(
2013569
)
|
| Sequences |
Amino acid
FASTA format
|
0001 METTQTSTIA SKDSRSAWRK TDTMWMLGLY GTAIGAGVLF LPINAGVGGM IPLIIMAILA FPMTFFAHRG
0071 LTRFVLSGKN PGEDITEVVE EHFGIGAGKL ITLLYFFAIY PILLVYSVAI TNTVESFMSH QLGMTPPPRA
0141 ILSLILIVGM MTIVRFGEQM IVKAMSILVF PFVGVLMLLA LYLIPQWNGA ALETLSLDTA SATGNGLWMT
0211 LWLAIPVMVF SFNHSPIISS FAVAKREEYG DMAEQKCSKI LAFAHIMMVL TVMFFVFSCV LSLTPADLAA
0281 AKEQNISILS YLANHFNAPV IAWMAPIIAI IAITKSFLGH YLGAREGFNG MVIKSLRGKG KSIEINKLNR
0351 ITALFMLVTT WIVATLNPSI LGMIETLGGP IIAMILFLMP MYAIQKVPAM RKYSGHISNV FVVVMGLIAI
0421 SAIFYSLFS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAGCCATCGC CGATAGACAG ATTTCATTTT
-070 TACGGTCAGG CACCTTCCCG GGCTGAACTG GCTAAAAGCT GAATTATTTG CATTCCTCCA GGAGAAATAG
0001 atggaaacga ctcaaaccag cacgattgcg tcgaaagact ctcgtagtgc ctggcgcaag acagacacca
0071 tgtggatgct gggcctttac ggcacggcaa tcggcgcggg cgtgctgttc ctgccaatca acgccggtgt
0141 tggcggtatg atcccgctga tcatcatggc tatccttgcg ttcccgatga cgttttttgc tcaccgcggc
0211 ctgactcgct tcgtactgtc tggtaaaaac ccgggcgaag acatcaccga ggttgtagaa gaacactttg
0281 gtattggcgc aggtaaactg attaccctgc tctacttctt cgctatctac ccgatcctgc tggtttatag
0351 cgtggcaatc accaataccg ttgaaagctt catgtctcac cagctgggta tgacgccacc gccgcgtgcg
0421 attctgtcgc tgatcctgat cgtgggtatg atgaccatcg ttcgcttcgg tgagcagatg atcgttaaag
0491 cgatgagtat tctggtattc ccgtttgttg gcgtactgat gctgctggct ctgtacctga tcccgcagtg
0561 gaacggcgct gcactggaaa cgctgtctct ggacactgca tctgcaaccg gaaacggtct gtggatgacc
0631 ctgtggctgg caattccggt aatggtgttc tcgttcaacc actctccgat catctcttct ttcgccgttg
0701 cgaagcgtga agagtacggc gatatggcag aacagaaatg ctcgaagatc ctggcattcg cacacatcat
0771 gatggtgctg accgtaatgt tcttcgtctt cagctgtgta ctgagcctga ctccggcaga cctggctgcg
0841 gctaaagagc agaacatctc gattctgtct tacctggcta accactttaa cgcaccggtt atcgcgtgga
0911 tggctccgat tatcgcgatt atcgctatca ccaaatcctt cctcggtcac tacctgggcg cacgtgaagg
0981 cttcaacggt atggtgatta aatctctgcg tggtaaaggt aagtctatcg aaatcaacaa gctgaaccgt
1051 atcactgcgc tgttcatgct ggtaacgacc tggattgttg ccaccctgaa cccgagcatc ctgggtatga
1121 ttgaaaccct gggcggtcca atcatcgcga tgatcctgtt cctgatgccg atgtacgcaa ttcagaaagt
1191 accggcaatg cgtaagtaca gcggtcacat cagcaacgta ttcgttgtcg tgatgggtct gattgcaatc
1261 tccgcaatct tctactctct gttcagctaa GTCCTTTCGC GCCGCTTTCG GGCGGCGCTT CCTCCGTTTT
1331 AACGCGATGT ATTTCCTATG ATTAGCGTAT TCGATATTTT CAAAATCGGC ATTGGCCCTT
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