|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL45-10
(D)
,
OCL45-8
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
queE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
queE
Search strains by all related name:
queE b2777 ECK2771 f223 JW2748 queE ygcF
|
General information (Go to Linear View: )
|
|
Gene Name
|
queE
|
|
Alternative name
|
b2777,ECK2771,f223,JW2748,queE,ygcF
|
|
Location, Length
|
2,902,769 - 2,903,440
(
-
)
;
62.56
min
;
672
(bp) ,
223
(aa)
|
|
Product
|
7-carboxy-7-deazaguanine synthase; queosine biosynthesis
|
|
Operon Name
|
ygcF
|
|
Note
|
GO_process: GO:0046138 - coenzyme and prosthetic group biosynthetic process
|
|
Function
|
enzyme; cofactor biosynthesis
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( ygcF )
GO:0005506
;
iron ion binding ( ygcF )
GO:0005515
;
protein binding ( ygcF )
GO:0046872
;
metal ion binding ( ygcF )
GO:0051536
;
iron-sulfur cluster binding ( ygcF )
GO:0051539
;
4 iron, 4 sulfur cluster binding ( ygcF )
|
|
PID
|
1789139
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YGCF_ECOLI
(
P55139
)
|
|
- Protein name
|
Hypothetical protein ygcF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygcF; OrderedLocusNames=b2777, z4089, ECs3633, SF2790, S2984;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygcF
|
|
PSI-BLAST
|
Lipoyl synthase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MQYPINEMFQ TLQGEGYFTG VPAIFIRLQG CPVGCAWCDT KHTWEKLEDR EVSLFSILAK TKESDKWGAA
0071 SSEDLLAVIG RQGYTARHVV ITGGEPCIHD LLPLTDLLEK NGFSCQIETS GTHEVRCTPN TWVTVSPKLN
0141 MRGGYEVLSQ ALERANEIKH PVGRVRDIEA LDELLATLTD DKPRVIALQP ISQKDDATRL CIETCIARNW
0211 RLSMQTHKYL NIA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 catttttctt taaacctgcc tgtaacagaa
-070 tgttaataag acatgattgt tgtggcagga tctgcaataa ttaacaatta tccacttcac agagaatgct
0001 atgcagtacc cgattaacga gatgttccag accctgcaag gtgagggtta ctttaccggc gttcccgcca
0071 tttttattcg tttacaggga tgcccggttg gctgtgcctg gtgcgacacc aaacacacct gggaaaagct
0141 tgaggatcgg gaagtctccc ttttcagcat tctggcgaag accaaagaga gtgataagtg gggggctgcg
0211 agcagtgaag atttgctggc tgtcattggt cgccagggat acaccgcgcg gcatgtggtg attacgggtg
0281 gtgagccttg cattcatgat ttgctgccac tgactgatct gctcgaaaag aacggtttta gctgccagat
0351 cgaaaccagt ggtactcatg aggtacgctg cacaccgaat acctgggtta ccgtatcgcc aaagctgaac
0421 atgcgcggcg gctatgaagt gttgtcacag gcactggagc gagccaacga aatcaagcat ccagtggggc
0491 gcgtacgcga tattgaagca ctggatgaac tactggcaac gctgaccgat gataaaccgc gagtcattgc
0561 actgcagccg attagccaaa aggatgatgc cacacgtttg tgcattgaaa cctgcattgc gcgtaattgg
0631 cgtttgtcga tgcaaacaca taaatatcta aatattgcct gattaaacat ttataagcgt tataaatggg
0701 tggaacctgt aaagacttct actcatttat attgtttgtc gcctctgaaa actcctccat tttacccatc
0771 ca
|
