|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL46
(D)
,
OCL46-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
casC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
casC
Search strains by all related name:
casC b2758 cas4 cas7 cse4 ECK2753 f363 f363a JW2728 ygcJ
|
General information (Go to Linear View: )
|
|
Gene Name
|
casC
|
|
Alternative name
|
b2758,cas4,cas7,cse4,ECK2753,f363,f363a,JW2728,ygcJ
|
|
Location, Length
|
2,879,073 - 2,880,164
(
-
)
;
62.05
min
;
1092
(bp) ,
363
(aa)
|
|
Product
|
CRISP RNA (crRNA) containing Cascade antiviral complex protein
|
|
Operon Name
|
casABCDE12
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ygcJ )
|
|
PID
|
1789116
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGCJ_ECOLI
(
Q46899
)
|
|
- Protein name
|
Hypothetical protein ygcJ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygcJ; OrderedLocusNames=b2758;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcJ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygcJ
|
|
PSI-BLAST
|
Hypothetical protein ygcJ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2758 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MSNFINIHVL ISHSPSCLNR DDMNMQKDAI FGGKRRVRIS SQSLKRAMRK SGYYAQNIGE SSLRTIHLAQ
0071 LRDVLRQKLG ERFDQKIIDK TLALLSGKSV DEAEKISADA VTPWVVGEIA WFCEQVAKAE ADNLDDKKLL
0141 KVLKEDIAAI RVNLQQGVDI ALSGRMATSG MMTELGKVDG AMSIAHAITT HQVDSDIDWF TAVDDLQEQG
0211 SAHLGTQEFS SGVFYRYANI NLAQLQENLG GASREQALEI ATHVVHMLAT EVPGAKQRTY AAFNPADMVM
0281 VNFSDMPLSM ANAFEKAVKA KDGFLQPSIQ AFNQYWDRVA NGYGLNGAAA QFSLSDVDPI TAQVKQMPTL
0351 EQLKSWVRNN GEA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aatggccagg atgttgacct ggtggggaaa
-070 gcgcgaacgc cagcaacttc tggaagattt tgtattgacc acaaacaaaa atgcgtaagg aaacctttct
0001 atgtctaact ttatcaatat tcatgttctg atctctcaca gcccttcatg tctgaaccgc gacgatatga
0071 acatgcagaa agacgctatt ttcggcggca aaagacgagt aagaatttca agtcaaagcc ttaaacgtgc
0141 gatgcgtaaa agtggttatt acgcacaaaa tattggtgaa tccagtctca gaaccattca tcttgcacaa
0211 ttacgtgatg ttcttcggca aaaacttggt gaacgttttg accaaaaaat catcgataag acattagcgc
0281 tgctctccgg taaatcagtt gatgaagccg aaaagatttc tgccgatgcg gttactccct gggttgtggg
0351 agaaatagcc tggttctgtg agcaggttgc aaaagcagag gctgataatc tggatgataa aaagctgctc
0421 aaagttctta aggaagatat tgccgccata cgtgtgaatt tacagcaggg tgttgatatt gcgcttagtg
0491 gaagaatggc aaccagcggc atgatgactg agttgggaaa agttgatggt gcaatgtcca ttgcgcatgc
0561 gatcactact catcaggttg attctgatat tgactggttc accgctgtag atgatttaca ggaacaaggt
0631 tctgcacatc tgggaactca ggaattttca tcgggtgttt tttatcgtta tgccaacatt aacctcgctc
0701 aacttcagga aaatttaggt ggtgcctcca gggagcaggc tctggaaatt gcaacccatg ttgttcatat
0771 gctggcaaca gaggtccctg gagcaaaaca gcgtacttat gccgctttta accctgcgga tatggtaatg
0841 gttaatttct ccgatatgcc actttctatg gcaaatgctt ttgaaaaagc ggttaaagcg aaagatggct
0911 ttttgcaacc gtctatacag gcgtttaatc aatattggga tcgcgttgcc aatggatatg gtctgaacgg
0981 agctgctgcg caattcagct tatctgatgt agacccaatt actgctcaag ttaaacaaat gcctacttta
1051 gaacagttaa aatcctgggt tcgtaataat ggcgaggcgt gaacatgaga tcttatttga tcttgcggct
1121 tgctgggcca atgcaagcct gggggcagcc gacctttgaa ggaacgcgac ctaccggaag atttccgacc
1191 cg
|
