|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
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|
References (PMID)
|
J Bacteriol. 1991;173(17):5523-31.
A gene for a new lipoprotein in the dapA-purC interval of the Escherichia coli chromosome.
Bouvier J, Pugsley AP, Stragier P.
(
1885529
)
|
|
|
Deletion
|
OCL58
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
bamC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
bamC
Search strains by all related name:
bamC b2477 dapX ECK2473 JW2462 nlpB
|
General information (Go to Linear View: )
|
|
Gene Name
|
bamC
|
|
Alternative name
|
b2477,dapX,ECK2473,JW2462,nlpB
|
|
Location, Length
|
2,595,853 - 2,596,887
(
-
)
;
55.95
min
;
1035
(bp) ,
344
(aa)
|
|
Product
|
lipoprotein required for OM biogenesis, in BamABCDE complex
|
|
Operon Name
|
dapA-bamC
|
|
Note
|
lipoprotein-34; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
membrane; Macromolecule synthesis, modification: Lipoprotein
|
|
Gene Ontology
|
GO:0009279
;
cell outer membrane ( nlpB )
GO:0016020
;
membrane ( nlpB )
GO:0019867
;
outer membrane ( nlpB )
|
|
PID
|
87082112
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
NLPB_ECOLI
(
P21167
;
P76564
)
|
|
- Protein name
|
Lipoprotein-34 precursor.
|
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- Synonyms
|
|
|
- Gene name
|
Name=nlpB; Synonyms=dapX; OrderedLocusNames=b2477, SF2520, S2670;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
nlpB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Lipoprotein 34 precursor
|
|
PSI-BLAST
|
Lipoprotein 34 precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
lipoprotein-34 [Shigella sonnei Ss046]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
GLYCOSYL_HYDROL_F1_1
|
|
MMBR References
|
J Bacteriol. 1991;173(17):5523-31.
A gene for a new lipoprotein in the dapA-purC interval of the Escherichia coli chromosome.
Bouvier J, Pugsley AP, Stragier P.
(
1885529
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MAYSVQKSRL AKVAGVSLVL LLAACSSDSR YKRQVSGDEA YLEAAPLAEL HAPAGMILPV TSGDYAIPVT
0071 NGSGAVGKAL DIRPPAQPLA LVSGARTQFT GDTASLLVEN GRGNTLWPQV VSVLQAKNYT ITQRDDAGQT
0141 LTTDWVQWNR LDEDEQYRGR YQISVKPQGY QQAVTVKLLN LEQAGKPVAD AASMQRYSTE MMNVISAGLD
0211 KSATDAANAA QNRASTTMDV QSAADDTGLP MLVVRGPFNV VWQRLPAALE KVGMKVTDST RSQGNMAVTY
0281 KPLSDSDWQE LGASDPGLAS GDYKLQVGDL DNRSSLQFID PKGHTLTQSQ NDALVAVFQA AFSK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acgctgcgcc tgccaatgac accaatcacc
-070 gacagtggtc gtgagacggt cagagcggcg cttaagcatg ccggtttgct gtaaagttta gggagatttg
0001 atggcttact ctgttcaaaa gtcgcgcctg gcaaaggttg cgggtgtttc gcttgtttta ttactcgctg
0071 cctgtagttc tgactcacgc tataagcgtc aggtcagtgg tgatgaagcc tacctggaag cggcaccgct
0141 tgcggagctt catgccccgg ctggaatgat tttgccggtg acctccggtg attatgcaat cccggtgacc
0211 aacggtagtg gtgctgtcgg taaggcgctg gacattcgtc caccagccca gccgctggca ctggtttctg
0281 gcgcgcgtac ccagttcacg ggcgataccg cttcattgct ggtggaaaat ggtcgtggca atactctgtg
0351 gccgcaggtg gttagcgtgc tgcaggcgaa aaactacacc atcacccaac gtgatgatgc tggtcagaca
0421 ctgaccaccg attgggtaca atggaaccgt ctggacgaag acgagcagta tcgtggtcgt tatcaaatct
0491 ctgttaagcc gcagggttat cagcaggcgg ttacggttaa actgctgaac ctggaacagg cgggcaaacc
0561 ggttgcagac gcggcttcca tgcagcgtta cagcacggag atgatgaacg ttatttccgc cggtctggat
0631 aaatctgcca ctgacgccgc gaacgctgcg caaaatcgtg cctccaccac tatggacgta caaagtgcag
0701 ctgatgacac cggtttacca atgctggtcg tacgcgggcc gttcaatgtg gtttggcaac gtctgccagc
0771 ggcgctggaa aaagtgggca tgaaagtgac cgacagcacc cgttcgcagg gcaacatggc cgtaacttat
0841 aagccgctgt ctgacagcga ctggcaggaa ctgggcgcga gcgatccagg cctggcatcc ggtgactata
0911 aactgcaggt tggcgattta gataaccgca gcagcctaca gttcatcgat ccgaaaggtc atactctgac
0981 tcagagtcag aacgacgcgc tggtagctgt cttccaggct gcgtttagca agtaaaaata cagggctgga
1051 atcatccggc ccttttttct gatatgatac gcaaacgtgt gcgtctgcag gaaaacgcga ttttagcggt
1121 aattcgcacg aaatt
|
