|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
9-1
(LD)
,
DE(gpt-lac)5
,
OCR36,37-6 (LD 9C::Ap)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ykfI
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ykfI
Search strains by all related name:
ykfI b0245 ECK0246 f113 f113b JW0234
|
General information (Go to Linear View: )
|
|
Gene Name
|
ykfI
|
|
Alternative name
|
b0245,ECK0246,f113,f113b,JW0234
|
|
Location, Length
|
262,552 - 262,893
(
-
)
;
5.66
min
;
342
(bp) ,
113
(aa)
|
|
Product
|
CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system
|
|
Operon Name
|
yafY-ykfBF-yafX-ykfGH-yafW-ykfI
|
|
Note
|
|
|
Function
|
Phage or Prophage Related
|
|
Gene Ontology
|
|
|
PID
|
1786439
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YKFI_ECOLI
(
P77692
)
|
|
- Protein name
|
Hypothetical protein ykfI.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ykfI; OrderedLocusNames=b0245;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ykfI
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ykfI
|
|
PSI-BLAST
|
Hypothetical protein ykfI
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MKTLPAITQR AVKPCLSPVA VWQMLLTRLL EQHYGLTIND TPFCNEAVIK EHIDAGITLA DAVNFLVEKY
0071 ELVRIDRKGF SWQEQSPYLR AADILRARQA TGLLRQSRNN VVR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acaacgattt aacctgcgaa gccgacaccc
-070 ttggcagttg cggctacgta tacatcgcca tttaccccac tcagcgttaa ttacctacac gagagcaaac
0001 atgaaaactt tacctgcaat aactcagcgg gcggtgaagc cctgcctgtc acccgtggct gtctggcaaa
0071 tgttactgac acgtctgctg gaacagcact atggtctgac aataaacgac acgccattct gcaatgaggc
0141 tgtgattaag gaacacatcg atgccggtat caccctagcc gatgccgtga attttctggt agaaaaatac
0211 gagctggttc gtatcgacag gaagggattt agctggcagg aacaatctcc ttatctccgg gctgcagaca
0281 ttctgcgagc gcggcaggca actggcttgt tgcggcaaag ccgtaacaac gtagtacgat gaacattgcg
0351 tacaaccttc ccgatttaca tttctgaact tcctcccttg tttacctatt gcgtaatgcg cctgctacta
0421 cccggcaggc gcgttatctt tt
|
