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Gene Report : rpsT
PEC Original Annotations
     Class non-essential
     References (PMID)
Mol Microbiol. 1993;7(6):983-92.
Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20.
Ryden-Aulin M, Shaoping Z, Kylsten P, Isaksson LA. ( 7683367 )
     Deletion OCR27 (D)  ,  OCR27-9 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rpsT
Related strains
     Strains Search Search strains by gene name:  rpsT   Search strains by all related name:  rpsT b0023 ECK0024 JW0022 sup

General information  (Go to Linear View:)
 Gene Name rpsT  
 Alternative name b0023,ECK0024,JW0022,sup  
 Location, Length 20,815 - 21,078 (  -  ) ;   0.45 min ; 264 (bp) ,   87 (aa) Go to Linear View
 Product 30S ribosomal subunit protein S20  
 Operon Name rpsT  
 Note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation  
 Function structural component; Ribosomal proteins - synthesis, modification  
 Gene Ontology GO:0003723 ; RNA binding ( rpsT )
GO:0003735 ; structural constituent of ribosome ( rpsT )
GO:0005622 ; intracellular ( rpsT )
GO:0005840 ; ribosome ( rpsT )
GO:0006412 ; translation ( rpsT )
GO:0019843 ; rRNA binding ( rpsT )
GO:0030529 ; ribonucleoprotein complex ( rpsT )
 PID 1786206  
 EC number
  (KEGG Pathway)
Verified Protein Starts (data compiled from literature and appropriate citations are available from EcoGene)
     EcoGene rpsT ( EG10919 )  
    Number of removed 1 aa cleaved  
SWISS-PROT  ( Show details )
  botton Entry name( RS20_ECOLI ( P02378 )
    -  Protein name 30S ribosomal protein S20.  
    -  Synonyms  
    -  Gene name Name=rpsT; OrderedLocusNames=b0023, c0027, z0027, ECs0026;  

 Linear View (Whole Mode)
View Location
   10.0  –  35.0 (KBP)

Homology Analysis
         GTOP rpsT (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain T, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST 30S ribosomal protein S20  
         PSI-BLAST 30S ribosomal protein S20
    nr     (database updated : 2007.02.20 )
         BLAST 30S ribosomal protein S20 [Escherichia coli O157:H7 EDL933]  
Pfam 28.0   (database updated : 2015-05 )

Other Cross-Reference
    COG COG0268J 
    EcoCyc rpsT 

MMBR References
J Biol Chem. 1981;256:8177-8182
Nucleotide sequence of the gene for ribosomal protein S20 and its flanking regions.
Mackie, G. A.
Nucleic Acids Res. 1986;14:6965-6981
Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element.
Mackie, G. A.
Mol Gen Genet. 1983;192(1-2):10-4.
Genetic characterization of a gene for prolipoprotein signal peptidase in Escherichia coli.
Yamagata H, Taguchi N, Daishima K, Mizushima S. ( 6227793 )

Amino acid
FASTA format

FASTA format

View sequence out neighbor 100bp
-100                                             acggcgctta tttgcacaaa tccattgaca 
-070 aaagaaggct aaaagggcat attcctcggc ctttgaattg tccatataga acacatttgg gagttggacc 
0001 ttggctaata tcaaatcagc taagaagcgc gccattcagt ctgaaaaggc tcgtaagcac aacgcaagcc 
0071 gtcgctctat gatgcgtact ttcatcaaga aagtatacgc agctatcgaa gctggcgaca aagctgctgc 
0141 acagaaagca tttaacgaaa tgcaaccgat cgtggaccgt caggctgcta aaggtctgat ccacaaaaac 
0211 aaagctgcac gtcataaggc taacctgact gcacagatca acaaactggc ttaatcgcca atttgctgaa 
0281 gctttgtgaa aaagcccgcg caagcgggtt tttttatgcc tgctgctttt gtgatgcgtg agagaacaca 
0351 ctgccggttg ccag