|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(lpcA-proB)70
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
prfH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
prfH
Search strains by all related name:
prfH b0236 ECK0237 JW0226 o166
|
General information (Go to Linear View: )
|
|
Gene Name
|
prfH
|
|
Alternative name
|
b0236,ECK0237,JW0226,o166
|
|
Location, Length
|
253,702 - 254,202
(
+
)
;
5.47
min
;
501
(bp) ,
166
(aa)
|
|
Product
|
|
|
Operon Name
|
ykfJ-prfH
|
|
Note
|
pseudogene, predicted peptide chain release factor homolog; probable peptide chain release factor; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006412 - translation
|
|
Function
|
|
|
Gene Ontology
|
GO:0003747
;
translation release factor activity ( prfH )
GO:0005515
;
protein binding ( prfH )
GO:0006412
;
translation ( prfH )
GO:0006415
;
translational termination ( prfH )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
RFH_ECOLI
(
P28369
;
P77246
)
|
|
- Protein name
|
Peptide chain release factor homolog
|
|
- Synonyms
|
RF-H
|
|
- Gene name
|
Name=prfH; OrderedLocusNames=b0236;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
prfH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Peptide chain release factor homolog
|
|
PSI-BLAST
|
Peptide chain release factor 1
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
peptide chain release factor 2 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
RF_PROK_I
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTAGTGGGGA TGCCAGATTT ACACCCCGGA
-070 CGCGGCTACC CGATTGGCGC AGCGTTCTTC TCTGTTGGTC GTTTTTACCC GGCAAGACGT CGCGGTAACG
0001 gtgctggaaa cagaaacggg ccgctactct gacacactgc gttcggcgct ggtttctctc gatggcgata
0071 acgcatgggc attaagcgaa agctggtgtg gcactattca gtggatttgt ccgagtccgt atcggcctca
0141 tcatgggcgc aaaaactggt ttctgggcat tgggcgtttt accgctgatg agcaggaaca atcggatgca
0211 atccgttatg agacgctgcg ttcgtcgggg ccgggcggtc aacatgtcaa taaaaccgac tcggcggtac
0281 gcgccacgca tttggcatcc ggtattagcg tgaaggttca gtcagagcgt agtcagcatg ctaacaagcg
0351 gctggcacga ttgctgattg cctggaagct ggagcaacag caacaggaaa atagcgcggc gctgaaatcg
0421 cagcggcgaa tgttccatca ccagattgaa cgtggcaacc cgcgacggac atttacaggg atggctttta
0491 tcgaaggata aTGAAGGATG AAACTGCCGG AAGGCGATTA AACGCCATCC GGCAGCAAAT CAAATAATTA
0561 CTTCGCCGGA ATTTCTTTCA GCAGTTCAGT CAGCAGTGTC C
|
