|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCL64
(D)
,
OCL64-10
(D)
,
OCL64-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
dedA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
dedA
Search strains by all related name:
dedA b2317 ECK2311 JW2314
|
General information (Go to Linear View: )
|
|
Gene Name
|
dedA
|
|
Alternative name
|
b2317,ECK2311,JW2314
|
|
Location, Length
|
2,432,104 - 2,432,763
(
-
)
;
52.42
min
;
660
(bp) ,
219
(aa)
|
|
Product
|
conserved inner membrane protein
|
|
Operon Name
|
pdxB-usg-truA-dedA
|
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( dedA )
GO:0016020
;
membrane ( dedA )
GO:0016021
;
integral to membrane ( dedA )
|
|
PID
|
1788656
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
DEDA_ECOLI
(
P09548
)
|
|
- Protein name
|
DedA protein
|
|
- Synonyms
|
DSG-1 protein
|
|
- Gene name
|
Name=dedA; OrderedLocusNames=b2317, z3579, ECs3201;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
dedA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein dedA (Protein DSG-1)
|
|
PSI-BLAST
|
Protein dedA (Protein DSG-1)
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z3579 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Biol Chem. 1987;262:12209-12217
The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons.
Nonet, M. L., C. C. Marvel, and D. R. Tolan.
|
| Sequences |
Amino acid
FASTA format
|
0001 MDLIYFLIDF ILHIDVHLAE LVAEYGVWVY AILFLILFCE TGLVVTPFLP GDSLLFVAGA LASLETNDLN
0071 VHMMVVLMLI AAIVGDAVNY TIGRLFGEKL FSNPNSKIFR RSYLDKTHQF YEKHGGKTII LARFVPIVRT
0141 FAPFVAGMGH MSYRHFAAYN VIGALLWVLL FTYAGYFFGT IPMVQDNLKL LIVGIIVVSI LPGVIEIIRH
0211 KRAAARAAK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ctatttctgg cggactaacg agaataatgc
-070 tcggaacatt tcaggctgta gccaacgtag ttacagcctg aaagatgacg agtacaaggc ataggcaaat
0001 atggacctga tttatttcct catcgatttt atcctgcaca ttgacgtgca tctggcagag ctggtcgcgg
0071 agtacggcgt ctgggtttat gccattttgt tcttaatttt gttctgtgaa accggtctgg tggtaacgcc
0141 gtttttaccg ggtgattcat tgctgtttgt tgccggagcg ttggcatcac tggaaaccaa cgatctcaac
0211 gtccatatga tggtggtgct gatgctgatc gccgcgattg tgggtgacgc ggtcaattac actatcgggc
0281 ggttgttcgg tgaaaagttg ttcagtaatc ccaattcgaa aattttccgt cgcagttatc tcgacaaaac
0351 ccatcagttt tatgagaaac atggcggcaa aacgattatt ctcgcccgtt ttgtgccgat cgtcagaacg
0421 ttcgccccgt ttgttgcggg aatgggccac atgtcgtacc gtcatttcgc cgcttataac gtgatcggcg
0491 cactgttgtg ggtactgctt tttacctacg caggctattt cttcggtaca atcccgatgg ttcaggataa
0561 ccttaagctg ctgatcgtcg ggattattgt ggtttctatt ttgccgggcg tcatcgaaat aatccgtcac
0631 aaacgcgctg cggcacgcgc cgcaaaataa aaagtaactc cgcggttcga ccactttttt atccaaagtt
0701 tcgggctgtt atgttttaat gtgcaacatt catggtctgt tgggggcaaa aatggcatta
|
