MG1655
W3110
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Gene Report : ubiX
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion OCL64 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  ubiX
Related strains
     Strains Search Search strains by gene name:  ubiX   Search strains by all related name:  ubiX b2311 dedF ECK2305 JW2308

General information  (Go to Linear View:)
 Gene Name ubiX  
 Alternative name b2311,dedF,ECK2305,JW2308  
 Location, Length 2,426,079 - 2,426,648 (  -  ) ;   52.29 min ; 570 (bp) ,   189 (aa) Go to Linear View
 Product 3-octaprenyl-4-hydroxybenzoate carboxy-lyase  
 Operon Name cvpA-purF-ubiX  
 Note GO_process: GO:0009060 - aerobic respiration  
 Function putative enzyme; Not classified  
 Gene Ontology GO:0003824 ; catalytic activity ( ubiX )
GO:0016829 ; lyase activity ( ubiX )
GO:0016831 ; carboxy-lyase activity ( ubiX )
 PID 1788650  
 EC number
  (KEGG Pathway)   		4.1.1.-  
SWISS-PROT  ( Show details [ 1 more] )
  botton Entry name(Acc.no) UBIX_ECOLI ( P09550 ; P77715 )
    -  Protein name 3-octaprenyl-4-hydroxybenzoate carboxy-lyase  
    -  Synonyms EC 4.1.1.-, Polyprenyl p-hydroxybenzoate decarboxylase  
    -  Gene name Name=ubiX; Synonyms=dedF; OrderedLocusNames=b2311, z3573, ECs3195;  

 Linear View (Whole Mode)
View Location
   2415.0  –  2440.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP ubiX (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of Dodecameric Fmn-Dependent Ubix-Like Decarboxylase From Escherichia Coli O157:h7  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (Polyprenyl p-hydroxybenzoate decarboxylase)  
         PSI-BLAST 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (Polyprenyl p-hydroxybenzoate decarboxylase)
    nr     (database updated : 2007.02.20 )
         BLAST 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 EDL933]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG0163H 
    EcoCyc ubiX 

MMBR References
J Biol Chem. 1987;262:12209-12217
The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons.
Nonet, M. L., C. C. Marvel, and D. R. Tolan.

Sequences
Amino acid
FASTA format 
0001 MKRLIVGISG ASGAIYGVRL LQVLRDVTDI ETHLVMSQAA RQTLSLETDF SLREVQALAD VTHDARDIAA 
0071 SISSGSFQTL GMVILPCSIK TLSGIVHSYT DGLLTRAADV VLKERRPLVL CVRETPLHLG HLRLMTQAAE 
0141 IGAVIMPPVP AFYHRPQSLD DVINQTVNRV LDQFAITLPE DLFARWQGA
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             ggatgatgcc ttcgctgagg gtgccggtct 
-070 ggcaccctga cttgcaactc ccgccgaaat cctgcaaagt ctgcctgcaa gtctgacagg gcaactattt 
0001 atgaaacgac tcattgtagg catcagcggt gccagcggcg cgatttatgg cgtgcgctta ttacaggttc 
0071 tgcgcgatgt cacagatatc gaaacgcatc tggtgatgag ccaggcagcg cgccagacct tatccctcga 
0141 aacggatttt tctctgcgcg aagtgcaggc attagccgat gtcacgcacg atgcgcgcga tattgccgcc 
0211 agcatctctt ccggttcttt ccagacgctg gggatggtga ttttaccctg ttcaatcaaa accctttccg 
0281 gcattgtcca tagctatact gatggcttac tgacccgtgc ggcagatgtg gtgctgaaag agcgtcgccc 
0351 gttggtgctc tgcgtgcgtg aaacaccatt gcacttaggc catctgcgtt taatgactca ggcggcagaa 
0421 atcggtgcgg tgattatgcc tcccgttccg gcgttttatc atcgcccgca atcccttgat gatgtgataa 
0491 atcagacggt taatcgtgtt cttgaccagt ttgcgataac ccttcctgaa gatctctttg cccgctggca 
0561 gggcgcataa ctccgctgtt gccctgtttc agggcaattt tgcaaccgcg atcaaatcct cgacattttg 
0631 tttctgccat tcaatcgaaa cgctgcgatt caaccgctat