|
PEC Original Annotations
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|
Essentiality
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Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(lpcA-proB)70
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lfhA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lfhA
Search strains by all related name:
lfhA b0229 ECK0230 fhiA JW5811
|
General information (Go to Linear View: )
|
|
Gene Name
|
lfhA
|
|
Alternative name
|
b0229,ECK0230,fhiA,JW5811
|
|
Location, Length
|
248,358 - 250,070
(
-
)
;
5.35
min
;
1713
(bp) ,
570
(aa)
|
|
Product
|
|
|
Operon Name
|
lfhA
|
|
Note
|
pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis; GO_component: GO:0019861 - flagellum; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
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Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( fhiA )
GO:0006810
;
transport ( fhiA )
GO:0009306
;
protein secretion ( fhiA )
GO:0015031
;
protein transport ( fhiA )
GO:0016020
;
membrane ( fhiA )
GO:0016021
;
integral to membrane ( fhiA )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
FHIA_ECOLI
(
Q47153
;
Q47681
)
|
|
- Protein name
|
FhiA protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=fhiA; OrderedLocusNames=b0229;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
fhiA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein fhiA
|
|
PSI-BLAST
|
Flagellar biosynthesis protein flhA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
flagellar system protein, promoterless fragment (pseudogene) [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
RGD
FHIPEP
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 agacgggctg attttattta acggcgacag
-070 cccaccaccg ttaaaaatcg actgcccgtg cagcgcggcg ataatgcttt cacgctcgga tttactgacg
0001 ctgttgacaa tcaactttat tgtcgtcacc aaaggggccg agcgtatttc cgaggtttct gcccgcttta
0071 ccttagacgc gatgcccggc aaacagatgg cgattgacgc cgatcttaac gccggattga tcaaccaggc
0141 gcaggcgcaa acccggcgta aagatgttgc cagcgaggcc gatttctacg gcgcgatgga cggggcatcg
0211 aagtttgtgc gcggggacgc catcgccggg atgatgattc tggcgatcaa cctgatcggc ggcgtctgta
0281 tcgggatctt caaatacaac ctgagcgccg atgctgcctt ccagcagtat gtgctgatga ccatcggcga
0351 cggcctggtg gcgcagatcc cttccctgct gctctccacc gcggcggcga ttatcgtcac ccgcgtcagc
0421 gacaacggcg atatcgccca tgacgtgcgt aaccagctgc tggcaagccc gtcggtgctc tacaccgcca
0491 ccgggattat gttcgtgctg gcggtggtac cgggaatgcc gcacctgccg tttttgctgt tcagcgccct
0561 gcttggtttt accggctggc ggatgagcaa acagccgctg gcggcggagg cggaagagaa aagcctcgaa
0631 acgctgaccc gcaccatcac cgaaaccagc gagcagcagg tcagttggga aaccattccg ctgatcgagc
0701 ctatcagttt aagcctcggt tacaaactgg tggcgctggt ggacaaagca cagggtaacc cgctcaccca
0771 gcggattcgc ggcgtgcggc aggtgatttc tgacggcaac ggcgtgctgc tgccggagat ccgcattcgg
0841 gaaaacttcc gccttaagcc cagtcagtac gccattttca tcaacggcat aaaggctgat gaagcggata
0911 ttccggcgga taaactgatg gccctgccct ccagcgaaac ctacggcgag attgacggcg tgcaggggaa
0981 cgacccggcg tacgggatgc cggtcacctg gatccaggcg gcgcagaaag cgaaggcgct gaatatgggg
1051 tatcaggtga tcgacagcgc cagcgtgatc gctacccatg taaataagat tgtgcgcagc tatattcctg
1121 atttgtttaa ctatgatgat attacgcagt tgcataaccg tttatcgtcg acggcaccgc gtctggcgga
1191 agatttgagc gcggcgctca attacagcca gttgctgaaa gtgtaccggg cgctgctgac cgaaggcgtt
1261 tccctgcgcg atatcgtcac catcgccacc gtgctggtcg ccagtagcac ggtgacgaaa gatcatattc
1331 tgctggcggc cgatgtgcgc ctggcattgc ggcgcagcat tacccatccg ttcgttcgca agcaggagct
1401 gacggtgtat acgctgaata atgagctgga aaatctgctg accaacgtgg tgaatcaggc gcaacagggc
1471 gggaaagtga tgctcgacag cgtgccggtc gatccgaata tgctcaacca gttccagagt acgatgccac
1541 aggtgaaaga gcagatgaaa gcggcgggga aagacccggt gctgctggtg ccaccgcagc tgcgcccttt
1611 gctggcgcgt tatgcaaggt tgtttgcgcc ggggctgcat gtgctgtcgt ataacgaagt gccggatgag
1681 ctggagttga agattatggg ggcgttgatg taagtatcca gcattggtgc acaactgccg gatgcggcgt
1751 gaacgcctta tccgtcctac cgttcaggca caagtttgta ggcatgataa gacgcgccag cgt
|
