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PEC Original Annotations
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Essentiality
|
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Class
|
non-essential
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References (PMID)
|
|
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Deletion
|
13
(LD)
,
OCL67,68-3 (LD 13B_CRS)
(D)
,
OCL67,68-4 (LD 13B_PO)
(D)
,
OCL68
(D)
|
|
Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
arnA
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Related strains
|
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Strains Search
|
Search strains by gene name:
arnA
Search strains by all related name:
arnA b2255 ECK2248 JW2249 o660 pbgP3 pmrI SAF yfbG
|
General information (Go to Linear View: )
|
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Gene Name
|
arnA
|
|
Alternative name
|
b2255,ECK2248,JW2249,o660,pbgP3,pmrI,SAF,yfbG
|
|
Location, Length
|
2,366,061 - 2,368,043
(
+
)
;
51.00
min
;
1983
(bp) ,
660
(aa)
|
|
Product
|
fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase
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Operon Name
|
arnBCADTEF
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Note
|
putative transformylase
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Function
|
putative enzyme; Not classified
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|
Gene Ontology
|
GO:0003824
;
catalytic activity ( arnA )
GO:0005488
;
binding ( arnA )
GO:0005515
;
protein binding ( arnA )
GO:0008152
;
metabolic process ( arnA )
GO:0008168
;
methyltransferase activity ( arnA )
GO:0008610
;
lipid biosynthetic process ( arnA )
GO:0009058
;
biosynthetic process ( arnA )
GO:0009103
;
lipopolysaccharide biosynthetic process ( arnA )
GO:0009245
;
lipid A biosynthetic process ( arnA )
GO:0016491
;
oxidoreductase activity ( arnA )
GO:0016616
;
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ( arnA )
GO:0016740
;
transferase activity ( arnA )
GO:0016742
;
hydroxymethyl-, formyl- and related transferase activity ( arnA )
GO:0044237
;
cellular metabolic process ( arnA )
GO:0046493
;
lipid A metabolic process ( arnA )
GO:0046677
;
response to antibiotic ( arnA )
GO:0050662
;
coenzyme binding ( arnA )
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|
PID
|
1788589
|
EC number
(KEGG Pathway)
|
2.1.2.-
4.1.1.35
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Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
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EcoGene
|
arnA
(
EG14091
)
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Number of removed
|
0 aa cleaved
|
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SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
FMT_ECOLI
(
P23882
;
P77040
)
|
|
- Protein name
|
Methionyl-tRNA formyltransferase
|
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- Synonyms
|
EC 2.1.2.9
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- Gene name
|
Name=fmt; OrderedLocusNames=b3288;
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Homology Analysis
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BLAST
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Bacteria
|
|
GTOP
|
yfbG
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain A, Crystal Structure Of Full Length Arna
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|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Bifunctional polymyxin resistance arnA protein
|
|
PSI-BLAST
|
Bifunctional polymyxin resistance arnA protein
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
hypothetical protein b2255 [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
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PROSITE
|
|
PROSITE
|
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MKTVVFAYHD MGCLGIEALL AAGYEISAIF THTDNPGEKA FYGSVARLAA ERGIPVYAPD NVNHPLWVER
0071 IAQLSPDVIF SFYYRHLIYD EILQLAPAGA FNLHGSLLPK YRGRAPLNWV LVNGETETGV TLHRMVKRAD
0141 AGAIVAQLRI AIAPDDIAIT LHHKLCHAAR QLLEQTLPAI KHGNILEIAQ RENEATCFGR RTPDDSFLEW
0211 HKPASVLHNM VRAVADPWPG AFSYVGNQKF TVWSSRVHPH ASKAQPGSVI SVAPLLIACG DGALEIVTGQ
0281 AGDGITMQGS QLAQTLGLVQ GSRLNSQPAC TARRRTRVLI LGVNGFIGNH LTERLLREDH YEVYGLDIGS
0351 DAISRFLNHP HFHFVEGDIS IHSEWIEYHV KKCDVVLPLV AIATPIEYTR NPLRVFELDF EENLRIIRYC
0421 VKYRKRIIFP STSEVYGMCS DKYFDEDHSN LIVGPVNKPR WIYSVSKQLL DRVIWAYGEK EGLQFTLFRP
0491 FNWMGPRLDN LNAARIGSSR AITQLILNLV EGSPIKLIDG GKQKRCFTDI RDGIEALYRI IENAGNRCDG
0561 EIINIGNPEN EASIEELGEM LLASFEKHPL RHHFPPFAGF RVVESSSYYG KGYQDVEHRK PSIRNAHRCL
0631 DWEPKIDMQE TIDETLDFFL RTVDLTDKPS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TACTCGGTGA ATATATCGGC AGGATCTACA
-070 CCGATGTCCG CGCCCGCCCC CGCTATTTTG TTCAGCAAGT TATCCGTCCA TCCAGCAAGG AAAATGAATA
0001 atgaaaaccg tcgtttttgc ctaccacgat atgggatgcc tcggtattga agccctgctg gctgccggtt
0071 acgaaattag cgccattttt acccatactg ataatcccgg tgaaaaagcc ttttatggtt cggtggctcg
0141 tctggcggcg gaaagaggca ttccggttta tgcgccggat aacgttaatc atccgctgtg ggtggaacgc
0211 attgcccaac tgtcgccaga tgtgattttc tctttttatt atcgccatct tatttacgac gaaattttgc
0281 agctcgctcc cgcaggtgca tttaatctgc atggttcgct gttaccaaaa tatcgtggtc gcgcgccgct
0351 gaactgggtg ctggtcaacg gtgaaacgga aactggcgtt acattgcacc gaatggtgaa acgtgccgat
0421 gccggggcca ttgtggcgca actgcgcatt gccattgcgc cagacgatat cgctattacg ctgcatcata
0491 aattgtgcca tgccgcgcgc cagctactgg aacagacatt acccgccatt aaacacggta atattctgga
0561 aatcgcccag cgcgaaaacg aagccacctg ttttggtcgc agaacgccgg atgacagttt ccttgaatgg
0631 cataaaccgg catccgtact gcacaacatg gtacgtgccg ttgccgatcc gtggccgggt gccttcagct
0701 atgttggcaa tcagaaattc accgtctggt cgtcgcgtgt tcatcctcat gccagcaaag cacagccggg
0771 gagcgtgatt tctgttgcgc cactgctgat tgcctgtggc gatggcgcgc tggaaatcgt caccggacag
0841 gcgggcgacg gcattactat gcagggctcg caattagcgc agacgctggg cctggtgcaa ggttcacgct
0911 tgaatagcca gcctgcctgc accgcccgac gccgtacccg ggtactcatc ctcggggtga atggctttat
0981 tggcaaccat ctgacagaac gcctgctgcg cgaagatcat tatgaagttt acggtctgga tattggcagc
1051 gatgcgataa gccgttttct gaatcatccg cattttcact ttgttgaagg cgatatcagt attcattccg
1121 aatggattga gtatcatgtc aaaaaatgtg atgtcgtctt gccgctggtg gcgatagcca cgccgattga
1191 atatacccgc aacccgctgc gcgtatttga actcgatttt gaagagaatc tgcgcattat ccgctactgc
1261 gtgaagtacc gtaagcgaat catcttcccg tcaacttcag aagtttatgg gatgtgtagc gataaatact
1331 tcgatgagga ccattctaat ttaatcgtcg gcccggtgaa taaaccacgc tggatttatt cggtatcaaa
1401 acaattactt gatcgggtga tctgggccta tggcgaaaaa gagggtttac agttcaccct cttccgcccg
1471 tttaactgga tgggaccacg actggataac cttaatgcag cgcgaattgg cagctcccgc gctattacgc
1541 aactcattct caatctggta gaaggttcac cgattaagct gattgatggc ggaaaacaaa aacgctgctt
1611 tactgatatt cgcgatggta tcgaggcgtt ataccgcatt atcgaaaatg cgggaaatcg ctgcgacggt
1681 gaaattatca acattggcaa tcctgagaac gaagcgagca ttgaggaact gggcgagatg ctgctggcga
1751 gcttcgaaaa acatccgctg cgccatcatt tcccaccgtt tgcgggcttt cgcgttgtcg aaagtagcag
1821 ctactacggc aaaggatatc aggacgtaga gcatcgtaaa ccgagcatcc gcaatgccca ccgctgcctg
1891 gactgggagc cgaaaattga tatgcaggaa accatcgacg aaacgctgga tttcttcctg cgcaccgttg
1961 atcttacgga taaaccatca tgaCCAAAGT AGGCTTACGC ATTGATGTCG ATACCTTTCG TGGCACCCGT
2031 GAAGGCGTGC CGCGTCTGCT GGAAATCTTG AGTAAGCATA ATATTCAGGC CAG
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