|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(lpcA-proB)70
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rayT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rayT
Search strains by all related name:
rayT b0228 ECK0229 JW0218 tnpAREP yafM
|
General information (Go to Linear View: )
|
|
Gene Name
|
rayT
|
|
Alternative name
|
b0228,ECK0229,JW0218,tnpAREP,yafM
|
|
Location, Length
|
247,637 - 248,134
(
+
)
;
5.34
min
;
498
(bp) ,
165
(aa)
|
|
Product
|
RAYT REP element-mobilizing transposase; TnpA(REP)
|
|
Operon Name
|
yafM
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( yafM )
|
|
PID
|
1786422
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YAFM_ECOLI
(
Q47152
)
|
|
- Protein name
|
Hypothetical protein yafM.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yafM; OrderedLocusNames=b0228;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yafM
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Carboxysome Shell Protein Ccmk4
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yafM
|
|
PSI-BLAST
|
Hypothetical protein yafM
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0228 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MSEYRRYYIK GGTWFFTVNL RNRRSQLLTT QYQMLRHAII KVKRDRPFEI NAWVVLPEHM HCIWTLPEGD
0071 DDFSSRWREI KKQFTHACGL KNIWQPRFWE HAIRNTKDYR HHVDYIYINP VKHGWVKQVS DWPFSTFHRD
0141 VARGLYPIDW AGDVTDFSAG ERIIS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCTACGAGCC CGCGAATATT TGCGAGCCGC
-070 TTTCCCGATA TAAAACAACC TCATTGCCAA CCTTTCCTTT TCTTCTTACC GTTGAGAAAA AGGAGTCGCC
0001 atgtctgaat atcgtcgtta ttacatcaag gggggaacat ggtttttcac ggtgaattta cgaaatcgtc
0071 gaagccaact tttgaccacc cagtaccaga tgctccgtca cgccattatt aaagttaagc gagacaggcc
0141 ttttgaaatc aacgcctggg tcgttttgcc agagcatatg cactgtatct ggacattacc tgaaggcgat
0211 gatgattttt cctcgcgctg gcgggaaatt aaaaagcaat ttacccatgc ttgtggattg aaaaatatct
0281 ggcaaccacg tttttgggag cacgccatcc gcaataccaa agattatagg catcatgttg attatattta
0351 tataaatcca gtaaagcatg gttgggtaaa gcaagtgagt gattggccat tctcaacgtt ccatcgcgat
0421 gtcgcgcgag ggttatatcc catcgattgg gcgggggacg taacggattt tagtgccggg gagcgtatca
0491 tttcataaTT GTGCGCAGAT GCCTGATGCG ACGCTAGCGC GTCTTATCAT GCCTACAAAC TTGTGCCGGA
0561 TCGGTAGGCC GGATAAGGCG TTTATGCCGC ATCCGGCA
|
