|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
16-1-2
(LD)
,
DE(sbcB-rfb)202
,
OCL74-2
(D)
,
OCL74-2,75-5 (LD 16-1-2_CRS)
(D)
,
OCL74-2,75-6 (LD 16-1-2_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rcnR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rcnR
Search strains by all related name:
rcnR b2105 ECK2098 f90 f90b JW2092 yohL
|
General information (Go to Linear View: )
|
|
Gene Name
|
rcnR
|
|
Alternative name
|
b2105,ECK2098,f90,f90b,JW2092,yohL
|
|
Location, Length
|
2,183,546 - 2,183,818
(
-
)
;
47.06
min
;
273
(bp) ,
90
(aa)
|
|
Product
|
DNA-binding transcriptional repressor of rcnA
|
|
Operon Name
|
rcnR
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1788422
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YOHL_ECOLI
(
P76424
)
|
|
- Protein name
|
Hypothetical protein yohL.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b2105, c2632, z3273, ECs2911, SF2167, S2292;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yohL
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yohL
|
|
PSI-BLAST
|
Hypothetical protein yohL
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z3273 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MSHTIRDKQK LKARASKIQG QVVALKKMLD EPHECAAVLQ QIAAIRGAVN GLMREVIKGH LTEHIVHQGD
0071 ELKREEDLDV VLKVLDSYIK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 attcggcaat ctgattctac tcccccccag
-070 tacctgatac taccccccag tagattaata gtgctatgat ttttcatatt cttgttaacc aggtgttgcc
0001 atgtctcata caatccgtga taaacagaaa ctgaaagcgc gtgccagtaa gattcagggc caggtcgtgg
0071 cgctcaagaa aatgctcgac gagccgcacg aatgcgctgc agttttacaa cagattgctg ctatccgtgg
0141 cgcggtaaac ggtctgatgc gggaagtgat taaaggtcat ctgacggaac acatcgttca ccagggggat
0211 gagctaaaac gtgaagaaga tctggatgtc gttctgaagg tgctggattc atatatcaaa taatttatta
0281 acgcgattgt aaaactgccg tttttcctcg tttacaacgc gtgcgctgga cattaccatc ctcctctgcg
0351 atttatcatc gcaaccaaac gac
|
