|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
16-1-2
(LD)
,
DE(sbcB-rfb)202
,
DE(his-dcd)453
,
OCL74-2,75-5 (LD 16-1-2_CRS)
(D)
,
OCL74-2,75-6 (LD 16-1-2_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
wcaC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
wcaC
Search strains by all related name:
wcaC b2057 ECK2051 f405 JW2042
|
General information (Go to Linear View: )
|
|
Gene Name
|
wcaC
|
|
Alternative name
|
b2057,ECK2051,f405,JW2042
|
|
Location, Length
|
2,128,877 - 2,130,094
(
-
)
;
45.88
min
;
1218
(bp) ,
405
(aa)
|
|
Product
|
putative glycosyl transferase
|
|
Operon Name
|
wcaCDEF-gmd-fcl-gmm-wcaI-cpsBG-wcaJ-wzxC
|
|
Note
|
GO_process: GO:0009242 - colanic acid biosynthetic process
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0009058
;
biosynthetic process ( wcaC )
GO:0009103
;
lipopolysaccharide biosynthetic process ( wcaC )
GO:0016740
;
transferase activity ( wcaC )
|
|
PID
|
1788370
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
WCAC_ECOLI
(
P71237
;
P76386
)
|
|
- Protein name
|
Putative colanic acid biosynthesis glycosyl transferase wcaC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=wcaC; OrderedLocusNames=b2057;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
wcaC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative colanic acid biosynthesis glycosyl transferase wcaC
|
|
PSI-BLAST
|
Putative colanic acid biosynthesis glycosyl transferase wcaC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted glycosyl transferase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MNILQFNVRL AEGGAAGVAL DLHQRALQQG LASHFVYGYG KGGKESVSHQ NYPQVIKHTP RMTAMANIAL
0071 FRLFNRDLFG NFNELYRTIT RTAGPVVLHF HVLHSYWLNL KSVVRFCEKV KNHKPDVTLV WTLHDHWSVT
0141 GRCAFTDGCE GWKTGCQKCP TLNNYPPVKI DRAHQLVAGK RQLFREMLAL GCQFISPSQH VADAFNSLYG
0211 PGRCRIINNG IDMATEAILA DLPPVRETQG KPKIAVVAHD LRYDGKTNQQ LVREMMALGD KIELHTFGKF
0281 SPFTAGNVVN HGFETDKRKL MSALNQMDAL VFSSRVDNYP LILCEALSIG VPVIATHSDA AREVLQKSGG
0351 KTVSEEEVLQ LVQLSKPEIA QAIFGTTLAE FSQRSRAAYS GQQMLEEYVN FYQNL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttggtaacaa cgtcaccgtg ggcgcgggca
-070 gcgtggtgct cgactctgtc ccggacaacg cgctggtggt gggagaaaaa gcgcgagtga aggtaattaa
0001 atgaatattt tgcaatttaa tgtgcgactg gcggaaggcg gggcagcagg tgtggcgtta gatctccacc
0071 agcgtgcgct gcaacagggg ctggcgtcac attttgtcta cggttacggc aaaggcggca aagagagcgt
0141 cagccatcag aactatccgc aggtcatcaa acatacgccg cggatgaccg cgatggcgaa tattgctctg
0211 tttcgtctgt ttaatcgcga tctgtttggc aatttcaatg agttatatcg caccattact cgcacagcgg
0281 gtccggtggt cctgcatttt catgtgctgc acagctactg gctaaatctt aagagcgtgg tgcgcttttg
0351 cgaaaaagtg aaaaaccata aaccggacgt cactctggtc tggacgctgc acgaccactg gagtgttacc
0421 ggacgctgcg cctttaccga cggttgcgaa ggctggaaaa caggctgcca gaaatgcccg accttaaata
0491 actatccgcc ggtgaagatt gatcgcgcac accaactggt ggcgggcaaa cgccagttat tccgtgagat
0561 gctggcgctg ggctgtcagt ttatttcccc cagccagcat gtggctgacg ctttcaatag cctgtacggt
0631 ccagggcgtt gccggattat caataatggc attgatatgg caactgaagc gattctggcg gacttgcctc
0701 cggtgcgcga aacccagggc aagccgaaaa tcgcggtggt ggcgcatgat ctgcgttacg acggcaaaac
0771 taaccagcaa ctggtacgcg agatgatggc gctgggcgac aaaattgaac tgcatacctt tggtaagttc
0841 tcgccgttca ccgctggcaa cgtggttaat cacggctttg aaaccgacaa acgtaagctg atgagcgcgc
0911 tcaatcagat ggatgcgctg gtattcagtt ctcgcgtcga taactacccg ctgattttgt gtgaggcgct
0981 atcgattggc gtgccggtga ttgccaccca tagcgatgcg gcgcgggaag tgttgcaaaa atccggcggt
1051 aaaaccgtca gcgaagaaga ggtgctgcaa ctggtgcagt taagcaaacc ggaaatcgcg caggcgatat
1121 ttggtaccac gctggctgag ttcagccaac gcagccgcgc cgcctacagt ggacaacaga tgctggagga
1191 gtatgtcaac ttctatcaga atctgtagct acctgttgct gccgctgatt tatctgctgg ttaacgtcaa
1261 aatcgcccag cttggcgaaa gtttccccat caccatcgtc acttttttac ctgtcttg
|
