MG1655
W3110
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Gene Report : araH
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
J Bacteriol. 1989;171(6):3053-9.
Genetic reconstitution of the high-affinity L-arabinose transport system.
Horazdovsky BF, Hogg RW. ( 2656640 )
     Deletion LD3-32-1 (LD)  ,  OCL79 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  araH
Related strains
     Strains Search Search strains by gene name:  araH   Search strains by all related name:  araH araH_2 b1898 b1899 b4460 ECK1897 JW1887

General information  (Go to Linear View:)
 Gene Name araH  
 Alternative name araH_2,b1898,b1899,b4460,ECK1897,JW1887  
 Location, Length 1,980,578 - 1,981,564 (  -  ) ;   42.69 min ; 987 (bp) ,   328 (aa) Go to Linear View
 Product fused L-arabinose transporter subunits of ABC superfamily: membrane components  
 Operon Name araFGH  
 Note high-affinity L-arabinose transport protein (ABC superfamily, membrane); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process  
 Function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols,1.1.1 metabolism; carbon utilization; carbon compounds,4.3.A.1.m transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporter  
 Gene Ontology GO:0005215; transporter activity ( araH )
GO:0005351; sugar:hydrogen ion symporter activity ( araH )
GO:0005886; plasma membrane ( araH )
GO:0006810; transport ( araH )
GO:0008643; carbohydrate transport ( araH )
GO:0016020; membrane ( araH )
GO:0016021; integral to membrane ( araH )
 PID 145693152  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details [ 1 more] )
  botton Entry name(Acc.no) ARAH_ECOLI ( P08532 ; P76304; P76305 )
    -  Protein name L-arabinose transport system permease protein araH.  
    -  Synonyms  
    -  Gene name Name=araH; OrderedLocusNames=b1898/b1899, SF1945, S2038;  

 Linear View (Whole Mode)
View Location
   1970.0  –  1995.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP araH (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
        PSI-BLAST  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST L-arabinose transport system permease protein araH  
         PSI-BLAST Ribose transport system permease protein rbsC
    nr     (database updated : 2007.02.20 )
         BLAST L-arabinose transport system permease protein [Shigella flexneri 2a str. 301]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    GLYCOSAMINOGLYCAN    PKC_PHOSPHO_SITE    MYRISTYL    PROKAR_LIPOPROTEIN     

Other Cross-Reference
    COG COG1172G 
    EcoCyc araH 

MMBR References
J Mol Biol. 1987;197(1):37-46.
High-affinity L-arabinose transport operon. Nucleotide sequence and analysis of gene products.
Scripture JB, Voelker C, Miller S, O'Donnell RT, Polgar L, Rade J, Horazdovsky BF, Hogg RW. ( 2445996 )

Sequences
Amino acid
FASTA format
0001 MSSVSTSGSG APKSSFSFGR IWDQYGMLVV FAVLFIACAI FVPNFATFIN MKGLGLAISM SGMVACGMLF 
0071 CLASGDFDLS VASVIACAGV TTAVVINLTE SLWIGVAAGL LLGVLCGLVN GFVIAKLKIN ALITTLATMQ 
0141 IVRGLAYIIS DGKAVGIEDE SFFALGYANW FGLPAPIWLT VACLIIFGLL LNKTTFGRNT LAIGGNEEAA 
0211 RLAGVPVVRT KIIIFVLSGL VSAIAGIILA SRMTSGQPMT SIGYELIVIS ACVLGGVSLK GGIGKISYVV 
0281 AGILILGTVE NAMNLLNISP FAQYVVRGLI LLAAVIFDRY KQKAKRTV

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             tcgccggtga attgttacac gagcaggcag 
-070 atgagcgtca ggcactgagc cttgcgatgc ctaaagtcag ccaggctgtt gcctgagtaa ggagagtatg 
0001 atgtcttctg tttctacatc ggggtctggc gcacctaagt cgtcattcag cttcgggcgt atctgggatc 
0071 agtacggcat gctggtggtg tttgcggtgc tctttatcgc ctgtgccatt tttgtcccaa attttgccac 
0141 cttcattaat atgaaagggt tgggcctggc aatttccatg tcggggatgg tggcttgtgg catgttgttc 
0211 tgcctcgctt ccggtgactt tgacctttct gtcgcctccg taattgcctg tgcgggtgtc accacggcgg 
0281 tggttattaa cctgactgaa agcctgtgga ttggcgtggc agcggggttg ttgctgggcg ttctctgtgg 
0351 cctggtcaat ggctttgtta tcgccaaact gaaaataaat gctctgatca cgacattggc aacgatgcag 
0421 attgttcgag gtctggcgta catcatttca gacggtaaag cggtcggtat cgaagatgaa agcttctttg 
0491 cccttggtta cgccaactgg ttcggtctgc ctgcgccaat ctggctcacc gtcgcgtgtc tgattatctt 
0561 tggtttgctg ctgaataaaa ccacctttgg tcgtaacacc ctggcgattg gcgggaacga agaggccgcg 
0631 cgtctggcgg gtgtaccggt tgttcgcacc aaaattatta tctttgttct ctcaggcctg gtatcagcga 
0701 tagccggaat tattctggct tcacgtatga ccagtgggca gccaatgacg tcgattggtt atgagctgat 
0771 tgttatctcc gcctgcgttt taggtggcgt ttctctgaaa ggtggcatcg gaaaaatctc atatgtggtg 
0841 gcgggtatct taattttagg caccgtggaa aacgccatga acctgcttaa tatttctcct ttcgcgcagt 
0911 acgtggttcg cggcttaatc ctgctggcag cggtgatctt cgaccgttac aagcaaaaag cgaaacgcac 
0981 tgtctgatgc ttttttctgc aacaatttag cgttttttcc caccatagcc aaccgccata acggttggct 
1051 gttcttcgtt gcaaatggcg acccccgtca cactgtc