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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
|
OCL82
(D)
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|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
kdgR
|
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Related strains
|
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Strains Search
|
Search strains by gene name:
kdgR
Search strains by all related name:
kdgR b1827 ECK1826 f263 f263b JW1816 yebP
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General information (Go to Linear View: )
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Gene Name
|
kdgR
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Alternative name
|
b1827,ECK1826,f263,f263b,JW1816,yebP
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|
Location, Length
|
1,907,332 - 1,908,123
(
-
)
;
41.11
min
;
792
(bp) ,
263
(aa)
|
|
Product
|
DNA-binding transcriptional regulator f kdgK, kdgT, eda
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Operon Name
|
kdgR
|
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Note
|
GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
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Function
|
putative regulator; Not classified
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Gene Ontology
|
GO:0003677
;
DNA binding ( kdgR )
GO:0006350
;
transcription ( kdgR )
GO:0006355
;
regulation of transcription, DNA-dependent ( kdgR )
|
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PID
|
1788131
|
EC number
(KEGG Pathway)
|
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
KDGR_ECOLI
(
P76268
;
O07975
)
|
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- Protein name
|
Transcriptional regulator kdgR.
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- Synonyms
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- Gene name
|
Name=kdgR; OrderedLocusNames=b1827;
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Homology Analysis
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BLAST
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Bacteria
|
|
GTOP
|
kdgR
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain A, Crystal Structure Of The Thermotoga Maritima Iclr
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Transcriptional regulator kdgR
|
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PSI-BLAST
|
Transcriptional regulator kdgR
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
predicted DNA-binding transcriptional regulator [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
|
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PROSITE
|
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
LEUCINE_ZIPPER
HTH_ICLR_FAMILY
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MMBR References
|
Proc R Soc Lond B Biol Sci. 1974;187(1087):121-31.
Genetical analysis of fructose utilization by Escherichia coli.
Jones-Mortimer MC, Kornberg HL.
(
4154035
)
|
Eur J Biochem. 1972;30(3):479-94.
[A common pathway for hexouronate degradation in Escherichia coli K 12. Induction mechanism of 2-keto-3-deoxy-gluconate metabolizing enzymes]
Pouyssegur JM, Stoeber FR.
(
4565407
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MANADLDKQP DSVSSVLKVF GILQALGEER EIGITELSQR VMMSKSTVYR FLQTMKTLGY VAQEGESEKY
0071 SLTLKLFELG ARALQNVDLI RSADIQMREL SRLTKETIHL GALDEDSIVY IHKIDSMYNL RMYSRIGRRN
0141 PLYSTAIGKV LLAWRDRDEV KQILEGVEYK RSTERTITST EALLPVLDQV REQGYGEDNE EQEEGLRCIA
0211 VPVFDRFGVV IAGLSISFPT LRFSEERLQE YVAMLHTAAR KISAQMGYHD YPF
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttgtaactaa ccggcaaaag atggattgcg
-070 accaccctgg tgcgaaatta taataaaaaa cagttctgat ttttataaaa cactcgcaat gaggtgataa
0001 atggctaacg cagatctgga taaacagcct gattctgtat cttccgtgct aaaagttttt ggcattttgc
0071 aggcgctggg tgaagagcgc gaaataggga taaccgagct gtcgcagcgc gtcatgatgt caaaaagcac
0141 cgtttatcgc tttttacaga ccatgaaaac cttaggttat gtggcgcagg aaggggagtc ggagaaatat
0211 tccctgaccc tgaaattgtt tgaactgggc gctcgcgcgt tacaaaacgt cgatttaatt cgtagcgcag
0281 atatccagat gcgtgagctc tcccgcctga ccaaagaaac tatccacctc ggcgcactgg acgaagacag
0351 tattgtttac attcacaaaa ttgactctat gtacaatttg cgcatgtatt cacggattgg gcgtcgtaat
0421 ccgctgtaca gcaccgcgat tggtaaggta ctgctggcat ggcgcgatcg cgatgaagtg aagcaaattc
0491 ttgagggcgt ggagtataaa cgcagtaccg agcggaccat caccagtaca gaagcgttat tacccgttct
0561 ggaccaggtg cgcgagcagg ggtatggcga agataatgaa gagcaggaag aagggctgcg atgcattgcg
0631 gtaccggtat ttgatcgctt tggcgtggtc attgccggtt tgagcatctc cttcccgacg ttgcgtttct
0701 ctgaagagcg tttacaggaa tatgtcgcaa tgttgcatac cgcagcgcgc aaaatttctg cccaaatggg
0771 ttatcacgac tatccgttct gatgagagta agaacctgtc ggaatatcaa acagacaggt tctttattta
0841 gcatgagaaa aataaagttg aaggtggcgt tatattaaac gcgcttgcta ta
|
