MG1655
W3110
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Gene Report : rplT
PEC Original Annotations
Essentiality
     Class essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion OCL85,86-8 (AK4-4 / BK6-4) (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rplT
Related strains
     Strains Search Search strains by gene name:  rplT   Search strains by all related name:  rplT b1716 ECK1714 JW1706 pdzA

General information  (Go to Linear View:)
 Gene Name rplT  
 Alternative name b1716,ECK1714,JW1706,pdzA  
 Location, Length 1,797,417 - 1,797,773 (  -  ) ;   38.74 min ; 357 (bp) ,   118 (aa) Go to Linear View
 Product 50S ribosomal subunit protein L20  
 Operon Name thrS-infC-rpmI-rplT-pheMST-ihfA  
 Note 50S ribosomal subunit protein L20, and regulator; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation  
 Function structural component; Ribosomal proteins - synthesis, modification  
 Gene Ontology GO:0000027; ribosomal large subunit assembly and maintenance ( rplT )
GO:0003723; RNA binding ( rplT )
GO:0003735; structural constituent of ribosome ( rplT )
GO:0005622; intracellular ( rplT )
GO:0005840; ribosome ( rplT )
GO:0006412; translation ( rplT )
GO:0019843; rRNA binding ( rplT )
GO:0030529; ribonucleoprotein complex ( rplT )
 PID 1788009  
 EC number
  (KEGG Pathway)
 
 
Verified Protein Starts (data compiled from literature and appropriate citations are available from EcoGene)
     EcoGene rplT ( EG10881 )  
    Number of removed 1 aa cleaved  
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) RL20_ECOLI ( P02421 ; Q47253 )
    -  Protein name 50S ribosomal protein L20.  
    -  Synonyms  
    -  Gene name t1216;  

 Linear View (Whole Mode)
View Location
   1785.0  –  1810.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP rplT (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain O, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST 50S ribosomal protein L20  
         PSI-BLAST 50S ribosomal protein L20
    nr     (database updated : 2007.02.20 )
         BLAST 50S ribosomal protein L20 [Escherichia coli O157:H7 EDL933]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE CAMP_PHOSPHO_SITE    MYRISTYL    RIBOSOMAL_L20     

Other Cross-Reference
    EcoCyc rplT 

MMBR References
J Mol Biol. 1983;171(3):239-61.
Escherichia coli phenylalanyl-tRNA synthetase operon region. Evidence for an attenuation mechanism. Identification of the gene for the ribosomal protein L20.
Fayat G, Mayaux JF, Sacerdot C, Fromant M, Springer M, Grunberg-Manago M, Blanquet S. ( 6317865 )

Sequences
Amino acid
FASTA format
0001 MARVKRGVIA RARHKKILKQ AKGYYGARSR VYRVAFQAVI KAGQYAYRDR RQRKRQFRQL WIARINAAAR 
0071 QNGISYSKFI NGLKKASVEI DRKILADIAV FDKVAFTALV EKAKAALA

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             tccaaaggcg atctgggcct ggtaatcgcg 
-070 tgcctgccgt acgcataagc cgttaacgtt tttaactttt taattagaat atagatacag gagagcacat 
0001 atggctcgcg taaaacgtgg tgttattgca cgtgcacgtc acaagaaaat tttgaaacaa gctaaaggct 
0071 actacggtgc gcgttctcgc gtataccgcg ttgccttcca ggctgttatc aaagctggtc agtatgctta 
0141 ccgtgaccgt cgtcaacgta agcgtcagtt ccgtcaactg tggattgcgc gtatcaacgc agcagcacgt 
0211 cagaacggta tttcttacag caaattcatc aatggcctga aaaaagcctc tgttgaaatc gaccgtaaga 
0281 tcctggctga tatcgcagta ttcgacaaag tagcgttcac cgctctggtt gaaaaagcga aagcagctct 
0351 ggcataagcc agttgaaaga gggagctagt ctccctcttt tcgtttcaac gccatcaaaa cattgacttt 
0421 tatcgccgta gccttttcaa taaaggtctt ttgaaga