MG1655
W3110
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Gene Report : rsxD
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion DE(PLK1608)  ,  OCL90-3 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rsxD
Related strains
     Strains Search Search strains by gene name:  rsxD   Search strains by all related name:  rsxD b1630 ECK1626 JW1622 o352 rnfD ydgO

General information  (Go to Linear View:)
 Gene Name rsxD  
 Alternative name b1630,ECK1626,JW1622,o352,rnfD,ydgO  
 Location, Length 1,707,166 - 1,708,224 (  +  ) ;   36.79 min ; 1059 (bp) ,   352 (aa) Go to Linear View
 Product electron transport complex protein required for the reduction of SoxR; predicted membrane protein  
 Operon Name ydgK-rsxABCDGE-nth  
 Note electron transport complex protein; GO_component: GO:0009274 - peptidoglycan-based cell wall  
 Function  
 Gene Ontology GO:0005886 ; plasma membrane ( rnfD )
GO:0006118 ; electron transport ( rnfD )
GO:0006810 ; transport ( rnfD )
GO:0016020 ; membrane ( rnfD )
GO:0016021 ; integral to membrane ( rnfD )
 PID 1787917  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details [ 1 more] )
  botton Entry name(Acc.no) RNFD_ECOLI ( P76182 )
    -  Protein name Electron transport complex protein rnfD.  
    -  Synonyms  
    -  Gene name Name=rnfD; OrderedLocusNames=b1630;  

 Linear View (Whole Mode)
View Location
   1695.0  –  1720.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP rsxD (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Electron transport complex protein rnfD  
         PSI-BLAST Electron transport complex protein rnfD
    nr     (database updated : 2007.02.20 )
         BLAST electron transport complex protein RnfD [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    CAMP_PHOSPHO_SITE    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG4658C 
    EcoCyc rsxD 

Sequences
Amino acid
FASTA format
0001 MVFRIASSPY THNQRQTSRI MLLVLLAAVP GIAAQLWFFG WGTLVQILLA SVSALLAEAL VLKLRKQSVA 
0071 ATLKDNSALL TGLLLAVSIP PLAPWWMVVL GTVFAVIIAK QLYGGLGQNP FNPAMIGYVV LLISFPVQMT 
0141 SWLPPHEIAV NIPGFIDAIQ VIFSGHTASG GDMNTLRLGI DGISQATPLD TFKTSVRAGH SVEQIMQYPI 
0211 YSGILAGAGW QWVNLAWLAG GVWLLWQKAI RWHIPLSFLV TLALCAMLGW LFSPETLAAP QIHLLSGATM 
0281 LGAFFILTDP VTASTTNRGR LIFGALAGLL VWLIRSFGGY PDGVAFAVLL ANITVPLIDY YTRPRVYGHR 
0351 KG

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             AGAAGAACAG GTTGATCCGC GCAAAGCGGC 
-070 AGTTGCCGCG GCTATTGCCC GCGCTCAGGC CAAAAAAGCC GCCCAGCAGA AGGTTGTAAA CGAGGACTAA 
0001 atggtattca gaatagctag ctccccttat acccataacc agcgccagac atcgcgcatt atgctgttgg 
0071 tgttgctcgc agccgtgcca ggaatcgcag cgcaactgtg gttttttggt tggggtactc tcgttcagat 
0141 cctgttggca tcggttagtg ctctgttagc cgaagctctc gtactcaaac tacgcaagca gtcggtagcc 
0211 gcaacgttga aagataactc agcattgctg acaggcttat tgctggcggt aagtattccc cccctcgcgc 
0281 catggtggat ggtcgtgctg ggtacggtgt ttgcggtgat catcgctaaa cagttgtatg gcggtctggg 
0351 acaaaacccg tttaatccgg caatgattgg ttatgtggtc ttactgatct ccttccccgt gcagatgacc 
0421 agctggttac cgccacatga aattgcggtc aacatccctg gttttatcga cgccatccag gttattttta 
0491 gcggtcatac cgccagtggt ggtgatatga acacactacg cttaggtatt gatggcatta gtcaggcgac 
0561 accgctggat acatttaaaa cctctgtccg tgccggtcat tcggttgaac agattatgca atatccgatc 
0631 tacagcggta ttctggcggg cgctggttgg caatgggtaa atctcgcctg gctggctggc ggcgtatggt 
0701 tgctatggca gaaagcgatt cgctggcata ttcccctcag cttcttagta acgctggcgt tatgcgcaat 
0771 gttgggctgg ttgttctcac cagaaacact ggcagcaccg caaattcatc tgctgtctgg agcgaccatg 
0841 ctcggcgcat tctttatttt gactgacccg gttaccgctt ctacgaccaa tcgtggtcgt cttattttcg 
0911 gcgcgcttgc gggcttatta gtctggttga tccgcagttt cggcggctat cctgacggcg tggcttttgc 
0981 cgtcctgctg gcgaacatca cggttcctct gatcgattac tacacgcgtc cgcgcgtcta cggccatcgc 
1051 aaagggtaaA CCATGCTGAA AACTATCCGA AAACACGGCA TTACGTTGGC GCTATTTGCA GCGGGTTCAA 
1121 CAGGGTTAAC TGCGGCCATC AACCAGATGA CCAAAACGA