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PEC Original Annotations
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|
Essentiality
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Class
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non-essential
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References (PMID)
|
|
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Deletion
|
DE(PLK1608)
,
OCL90-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rsxD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rsxD
Search strains by all related name:
rsxD b1630 ECK1626 JW1622 o352 rnfD ydgO
|
General information (Go to Linear View: )
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|
Gene Name
|
rsxD
|
|
Alternative name
|
b1630,ECK1626,JW1622,o352,rnfD,ydgO
|
|
Location, Length
|
1,707,166 - 1,708,224
(
+
)
;
36.79
min
;
1059
(bp) ,
352
(aa)
|
|
Product
|
electron transport complex protein required for the reduction of SoxR; predicted membrane protein
|
|
Operon Name
|
ydgK-rsxABCDGE-nth
|
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Note
|
electron transport complex protein; GO_component: GO:0009274 - peptidoglycan-based cell wall
|
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Function
|
|
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Gene Ontology
|
GO:0005886
;
plasma membrane ( rnfD )
GO:0006118
;
electron transport ( rnfD )
GO:0006810
;
transport ( rnfD )
GO:0016020
;
membrane ( rnfD )
GO:0016021
;
integral to membrane ( rnfD )
|
|
PID
|
1787917
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
RNFD_ECOLI
(
P76182
)
|
|
- Protein name
|
Electron transport complex protein rnfD.
|
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- Synonyms
|
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- Gene name
|
Name=rnfD; OrderedLocusNames=b1630;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rsxD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Electron transport complex protein rnfD
|
|
PSI-BLAST
|
Electron transport complex protein rnfD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
electron transport complex protein RnfD [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MVFRIASSPY THNQRQTSRI MLLVLLAAVP GIAAQLWFFG WGTLVQILLA SVSALLAEAL VLKLRKQSVA
0071 ATLKDNSALL TGLLLAVSIP PLAPWWMVVL GTVFAVIIAK QLYGGLGQNP FNPAMIGYVV LLISFPVQMT
0141 SWLPPHEIAV NIPGFIDAIQ VIFSGHTASG GDMNTLRLGI DGISQATPLD TFKTSVRAGH SVEQIMQYPI
0211 YSGILAGAGW QWVNLAWLAG GVWLLWQKAI RWHIPLSFLV TLALCAMLGW LFSPETLAAP QIHLLSGATM
0281 LGAFFILTDP VTASTTNRGR LIFGALAGLL VWLIRSFGGY PDGVAFAVLL ANITVPLIDY YTRPRVYGHR
0351 KG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGAAGAACAG GTTGATCCGC GCAAAGCGGC
-070 AGTTGCCGCG GCTATTGCCC GCGCTCAGGC CAAAAAAGCC GCCCAGCAGA AGGTTGTAAA CGAGGACTAA
0001 atggtattca gaatagctag ctccccttat acccataacc agcgccagac atcgcgcatt atgctgttgg
0071 tgttgctcgc agccgtgcca ggaatcgcag cgcaactgtg gttttttggt tggggtactc tcgttcagat
0141 cctgttggca tcggttagtg ctctgttagc cgaagctctc gtactcaaac tacgcaagca gtcggtagcc
0211 gcaacgttga aagataactc agcattgctg acaggcttat tgctggcggt aagtattccc cccctcgcgc
0281 catggtggat ggtcgtgctg ggtacggtgt ttgcggtgat catcgctaaa cagttgtatg gcggtctggg
0351 acaaaacccg tttaatccgg caatgattgg ttatgtggtc ttactgatct ccttccccgt gcagatgacc
0421 agctggttac cgccacatga aattgcggtc aacatccctg gttttatcga cgccatccag gttattttta
0491 gcggtcatac cgccagtggt ggtgatatga acacactacg cttaggtatt gatggcatta gtcaggcgac
0561 accgctggat acatttaaaa cctctgtccg tgccggtcat tcggttgaac agattatgca atatccgatc
0631 tacagcggta ttctggcggg cgctggttgg caatgggtaa atctcgcctg gctggctggc ggcgtatggt
0701 tgctatggca gaaagcgatt cgctggcata ttcccctcag cttcttagta acgctggcgt tatgcgcaat
0771 gttgggctgg ttgttctcac cagaaacact ggcagcaccg caaattcatc tgctgtctgg agcgaccatg
0841 ctcggcgcat tctttatttt gactgacccg gttaccgctt ctacgaccaa tcgtggtcgt cttattttcg
0911 gcgcgcttgc gggcttatta gtctggttga tccgcagttt cggcggctat cctgacggcg tggcttttgc
0981 cgtcctgctg gcgaacatca cggttcctct gatcgattac tacacgcgtc cgcgcgtcta cggccatcgc
1051 aaagggtaaA CCATGCTGAA AACTATCCGA AAACACGGCA TTACGTTGGC GCTATTTGCA GCGGGTTCAA
1121 CAGGGTTAAC TGCGGCCATC AACCAGATGA CCAAAACGA
|
