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PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(PLK1608)
,
OCL90-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rsxA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rsxA
Search strains by all related name:
rsxA b1627 ECK1623 JW1619 o193 rnfA ydgL
|
General information (Go to Linear View: )
|
|
Gene Name
|
rsxA
|
|
Alternative name
|
b1627,ECK1623,JW1619,o193,rnfA,ydgL
|
|
Location, Length
|
1,703,791 - 1,704,372
(
+
)
;
36.72
min
;
582
(bp) ,
193
(aa)
|
|
Product
|
electron transport complex protein required for the reduction of SoxR
|
|
Operon Name
|
ydgK-rsxABCDGE-nth
|
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( rnfA )
GO:0006118
;
electron transport ( rnfA )
GO:0006810
;
transport ( rnfA )
GO:0009276
;
1-2nm peptidoglycan-based cell wall ( rnfA )
GO:0016020
;
membrane ( rnfA )
GO:0016021
;
integral to membrane ( rnfA )
|
|
PID
|
1787914
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RNFA_ECOLI
(
P76181
)
|
|
- Protein name
|
Electron transport complex protein rnfA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rnfA; OrderedLocusNames=b1627, c2019, z2633, ECs2336;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rsxA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Electron transport complex protein rnfA
|
|
PSI-BLAST
|
Electron transport complex protein rnfA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Na(+)-translocating NADH-quinone reductase subunit E [Escherichia coli O157:H7 str. Sakai]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MTDYLLLFVG TVLVNNFVLV KFLGLCPFMG VSKKLETAMG MGLATTFVMT LASICAWLID TWILIPLNLI
0071 YLRTLAFILV IAVVVQFTEM VVRKTSPVLY RLLGIFLPLI TTNCAVLGVA LLNINLGHNF LQSALYGFSA
0141 AVGFSLVMVL FAAIRERLAV ADVPAPFRGN AIALITAGLM SLAFMGFSGL VKL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAAGCGACGT TTGTGAATCC GTAATAACCT
-070 TACAGTTAAC CTGTTGTCGC CTGCTCTGGA TTAACGGATA ATAGGCGGCT TTTTTATTTC AGGCCGAAAA
0001 atgactgact acctgttact gtttgtcgga actgtactgg tcaataactt tgtactggtc aagtttctcg
0071 gtctctgtcc gtttatgggg gtttccaaaa aactggaaac cgcgatgggc atggggctgg caacaacgtt
0141 tgtgatgacg ctggcgtcta tttgcgcctg gcttatcgat acgtggattt tgatcccact taatctgatt
0211 tacctgcgca ccctggcatt tattctggtg attgctgtgg tcgtgcagtt caccgagatg gtggtgcgca
0281 aaaccagccc ggtgctttac cgtctgctgg ggattttttt gccgcttatc accaccaact gtgcagtgct
0351 cggcgtggcg ttgctgaata tcaatctcgg gcacaatttc ttgcagtcgg cgctgtacgg tttttccgcc
0421 gctgtcggtt tctcgctggt gatggtgctc ttcgccgcca tccgcgaacg ccttgctgtg gctgatgtcc
0491 cggcaccttt tcgcggtaat gccattgcgt taattaccgc aggtcttatg tctctggcct ttatgggctt
0561 tagtggtttg gtgaagttgt aaTGAATGCT ATCTGGATTG CCGTTGCCGC CGTGAGCCTG CTGGGCCTGG
0631 CGTTTGGCGC CATTCTGGGT TATGCCTCCC GCCGTTTTGC GGTGGAAGAC GA
|
