MG1655
W3110
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Gene Report : ydgK
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion DE(PLK1608)  ,  OCL90-3 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  ydgK
Related strains
     Strains Search Search strains by gene name:  ydgK   Search strains by all related name:  ydgK b1626 ECK1622 JW1618 o154 rsxP

General information  (Go to Linear View:)
 Gene Name ydgK  
 Alternative name b1626,ECK1622,JW1618,o154,rsxP  
 Location, Length 1,703,274 - 1,703,714 (  +  ) ;   36.71 min ; 441 (bp) ,   146 (aa) Go to Linear View
 Product inner membrane protein, DUF2569 family  
 Operon Name ydgK-rsxABCDGE-nth  
 Note  
 Function  
 Gene Ontology GO:0005886 ; plasma membrane ( ydgK )
GO:0016020 ; membrane ( ydgK )
GO:0016021 ; integral to membrane ( ydgK )
 PID 87081948  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) YDGK_ECOLI ( P76180 )
    -  Protein name Hypothetical protein ydgK.  
    -  Synonyms  
    -  Gene name Name=ydgK; OrderedLocusNames=b1626;  

 Linear View (Whole Mode)
View Location
   1690.0  –  1715.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP ydgK (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
        PSI-BLAST  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Inner membrane protein ydgK  
         PSI-BLAST Inner membrane protein ydgK
    nr     (database updated : 2007.02.20 )
         BLAST probable membrane protein b1626 - Escherichia coli  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE CAMP_PHOSPHO_SITE    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL    LEUCINE_ZIPPER     

Other Cross-Reference
    EcoCyc ydgK 

Sequences
Amino acid
FASTA format
0001 MTTTTPQRIG GWLLGPLAWL LVALLSTTLA LLLYTAALSS PQTFQTLGGQ ALTTQILWGV SFITAIALWY 
0071 YTLWLTIAFF KRRRCVPKHY IIWLLISVLL AVKAFAFSPV EDGIAVRQLL FTLLATALIV PYFKRSSRVK 
0141 ATFVNP

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             CACTATGTCC AATAAAGAAA GTAGCGATCG 
-070 GTTATAAAAG CCTTATAATA ACGCCCCTAA AATTAGATTT GCCTGTTTGC GTCGCTATTC TGGAGAACCT 
0001 atgaccacca caacgccaca acgtattgga ggctggttgc ttggcccgtt ggcctggctt ttagtcgctc 
0071 tgttgagtac gacgctggcg ttgttgctgt ataccgctgc gttatcttct ccgcaaacat ttcaaacgct 
0141 cggcggacaa gcactgacga cacaaatctt atggggcgtt tcttttatta ccgctatcgc cttgtggtat 
0211 tacacactgt ggttgaccat cgctttcttt aaacgtcggc gttgtgttcc taaacactat attatctggc 
0281 tgcttatttc cgtattgctg gcagtaaaag cattcgcttt ttcacccgtg gaagatggca tagccgttcg 
0351 ccagttgctg tttactttgt tggcaaccgc attgatcgtc ccctatttca aacgctcgtc gcgggtaaaa 
0421 gcgacgtttg tgaatccgta aTAACCTTAC AGTTAACCTG TTGTCGCCTG CTCTGGATTA ACGGATAATA 
0491 GGCGGCTTTT TTATTTCAGG CCGAAAAATG ACTGACTACC TGTTACTGTT T