|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lsrF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lsrF
Search strains by all related name:
lsrF b1517 ECK1510 JW1510 o291 yneB
|
General information (Go to Linear View: )
|
|
Gene Name
|
lsrF
|
|
Alternative name
|
b1517,ECK1510,JW1510,o291,yneB
|
|
Location, Length
|
1,604,124 - 1,604,999
(
+
)
;
34.57
min
;
876
(bp) ,
291
(aa)
|
|
Product
|
putative autoinducer-2 (AI-2) aldolase
|
|
Operon Name
|
lsrACDBFG-tam
|
|
Note
|
|
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Function
|
modification of phospho-autoinducer-2 (organism: Escherichia coli MG1655)
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( yneB )
GO:0008152
;
metabolic process ( yneB )
GO:0016829
;
lyase activity ( yneB )
|
|
PID
|
1787796
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YNEB_ECOLI
(
P76143
)
|
|
- Protein name
|
Putative aldolase yneB
|
|
- Synonyms
|
EC 4.2.1.-
|
|
- Gene name
|
Name=yneB; OrderedLocusNames=b1517;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
lsrF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of An Archaeal Fructose 1,6-Bisphosphate Aldolase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative aldolase yneB
|
|
PSI-BLAST
|
Imidazole glycerol phosphate synthase subunit hisF
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b1517 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
CRYSTALLIN_BETAGAMMA
|
| Sequences |
Amino acid
FASTA format
|
0001 MADLDDIKDG KDFRTDQPQK NIPFTLKGCG ALDWGMQSRL SRIFNPKTGK TVMLAFDHGY FQGPTTGLER
0071 IDINIAPLFE HADVLMCTRG ILRSVVPPAT NRPVVLRASG ANSILAELSN EAVALSMDDA VRLNSCAVAA
0141 QVYIGSEYEH QSIKNIIQLV DAGMKVGMPT MAVTGVGKDM VRDQRYFSLA TRIAAEMGAQ IIKTYYVEKG
0211 FERIVAGCPV PIVIAGGKKL PEREALEMCW QAIDQGASGV DMGRNIFQSD HPVAMMKAVQ AVVHHNETAD
0281 RAYELYLSEK Q
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATGGTAATGG CATCGTACTG TTACCGGAGC
-070 GCGTGATATT CAACAAAGAG AATATCGGCA AATACGATTT CTGATGTGCA TTACTTAACC GGAGTAAGTT
0001 atggcagatt tagacgatat taaagatggt aaagattttc gtaccgatca accgcaaaaa aatatccctt
0071 ttaccctgaa aggttgcggt gcgctggatt ggggaatgca gtcacgctta tcgcggatat ttaatccgaa
0141 aacgggtaaa accgtgatgc tggcttttga ccatggttat tttcagggac cgactaccgg acttgaacgc
0211 attgatataa atatcgcccc gctgtttgaa catgccgatg tattaatgtg tacgcgcggc attttgcgca
0281 gcgtagttcc ccctgcgacc aataggccgg tggtactgcg ggcgtcaggt gcgaactcta ttctggcgga
0351 attaagtaat gaagccgtgg cgttatcgat ggatgacgcc gtgcgcctga acagttgcgc ggtggcggcg
0421 caggtttata tcggcagcga atatgaacat cagtcgatca aaaatattat tcagctggtt gatgccggaa
0491 tgaaagtggg aatgccgacc atggccgtga ctggcgtggg caaagatatg gtgcgcgatc agcgttattt
0561 ctcgctcgcg actcgaatcg ccgctgaaat gggggcgcaa attatcaaaa cctattatgt cgaaaaaggt
0631 tttgaacgga ttgttgccgg atgtccggta cccattgtta ttgctggcgg taaaaaatta ccggagcgcg
0701 aggcgctgga aatgtgctgg caggctatcg atcagggcgc ttctggtgtg gatatggggc gtaatatttt
0771 ccagtctgac catccggtgg cgatgatgaa agccgtacag gcggtggttc accataacga aacggctgat
0841 cgggcatatg aactctatct gagtgaaaaa cagtaaCTGC GGATCTAAGG AGAAGAATTA TGCACGTCAC
0911 ACTGGTTGAA ATTAACGTTC ATGAAGACAA GGTTGACGAG TTTATCGAAG TTTTTCGCCA GAACCA
|
