|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lsrB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lsrB
Search strains by all related name:
lsrB b1516 ECK1509 JW1509 o340 yneA
|
General information (Go to Linear View: )
|
|
Gene Name
|
lsrB
|
|
Alternative name
|
b1516,ECK1509,JW1509,o340,yneA
|
|
Location, Length
|
1,603,075 - 1,604,097
(
+
)
;
34.55
min
;
1023
(bp) ,
340
(aa)
|
|
Product
|
autoinducer 2-binding protein
|
|
Operon Name
|
lsrACDBFG-tam
|
|
Note
|
periplasmic autoinducer-2 (AI-2) binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space
|
|
Function
|
putative regulator; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1787795
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
RBSB_ECOLI
(
P02925
)
|
|
- Protein name
|
D-ribose-binding periplasmic protein precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rbsB; Synonyms=rbsP, prlB; OrderedLocusNames=b3751;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
lsrB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Salmonella Typhimurium Ai-2 Receptor Lsrb In Complex With R-Thmf
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yneA precursor
|
|
PSI-BLAST
|
HTH-type transcriptional repressor purR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
AI2 transporter [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MTLHRFKKIA LLSALGIAAI SMNVQAAERI AFIPKLVGVG FFTSGGNGAQ QAGKELGVDV TYDGPTEPSV
0071 SGQVQLINNF VNQGYNAIIV SAVSPDGLCP ALKRAMQRGV RVLTWDSDTK PECRSYYINQ GTPAQLGGML
0141 VDMAARQVNK DKAKVAFFYS SPTVTDQNQW VKEAKAKIAK EHPGWEIVTT QFGYNDATKS LQTAEGILKA
0211 YSDLDAIIAP DANALPAAAQ AAENLKNDKV AIVGFSTPNV MRPYVERGTV KEFGLWDVVQ QGKISVYVAD
0281 ALLKKGSMKT GDKLDIKGVG QVEVSPNSVQ GYDYEADGNG IVLLPERVIF NKENIGKYDF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCGTCGTTGT CGTAGGTCGT TCCGTTAGCC
-070 TGCATCGCCA GCAAATTAAA GAGTGGCTGG CGCGTCGGGC CAATAACCCA TTGCCATAAA GGATATCTTC
0001 atgacacttc atcgctttaa gaaaatcgcc ttacttagcg ctcttggcat tgccgcaatc tctatgaatg
0071 tgcaggccgc agagcgtatt gcatttattc ccaaactggt tggcgtggga ttttttacca gcggtggcaa
0141 cggcgcacaa caagcgggta aagagctggg cgttgatgtg acctacgacg ggccgacaga acccagtgtt
0211 tctggtcagg tacagttgat taataacttc gtcaatcaag gttataacgc cattatcgtt tctgcggttt
0281 cgcctgatgg cttgtgtccg gcactgaaac gcgccatgca acgtggtgtg agagtgctga cctgggactc
0351 tgatactaaa ccggagtgcc gctcttacta cattaatcag ggaacgcccg cccagttagg aggtatgttg
0421 gtggatatgg cggcgcgtca ggtgaataaa gacaaagcca aagtcgcgtt tttctactca agccccaccg
0491 ttacggacca aaaccagtgg gtgaaagaag cgaaagcgaa aatcgccaaa gagcatccag gctgggaaat
0561 tgtcactacg cagtttggct ataacgatgc cactaaatcg ttacaaaccg cagaaggaat attaaaagcg
0631 tatagcgatc tcgacgccat tatcgccccc gatgccaacg ccctgcccgc tgccgcacaa gccgcagaaa
0701 acttgaaaaa tgacaaagta gcgattgtcg gattcagtac gccaaatgtg atgcgcccgt atgtagagcg
0771 cggcacggtg aaagaatttg gcctgtggga tgtggttcag caaggcaaaa tttcagtgta tgtcgcggat
0841 gcattattga aaaaaggatc aatgaaaacg ggcgacaagc tggatatcaa gggcgtaggt caggttgaag
0911 tctcgccaaa cagcgttcag ggctatgact acgaagcgga tggtaatggc atcgtactgt taccggagcg
0981 cgtgatattc aacaaagaga atatcggcaa atacgatttc tgaTGTGCAT TACTTAACCG GAGTAAGTTA
1051 TGGCAGATTT AGACGATATT AAAGATGGTA AAGATTTTCG TACCGATCAA CCGCAAAAAA ATATCCCTTT
1121 TAC
|
