|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lsrC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lsrC
Search strains by all related name:
lsrC b1514 ECK1507 JW1507 o342 ydeY
|
General information (Go to Linear View: )
|
|
Gene Name
|
lsrC
|
|
Alternative name
|
b1514,ECK1507,JW1507,o342,ydeY
|
|
Location, Length
|
1,601,043 - 1,602,071
(
+
)
;
34.51
min
;
1029
(bp) ,
342
(aa)
|
|
Product
|
autoinducer 2 import system permease protein
|
|
Operon Name
|
lsrACDBFG-tam
|
|
Note
|
autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
forms heterodimeric membrane channel with LsrD for the uptake of autoinducer-2 (AI-2) (organism: Escherichia coli MG1655)
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( ydeY )
GO:0005886
;
plasma membrane ( ydeY )
GO:0006810
;
transport ( ydeY )
GO:0016020
;
membrane ( ydeY )
GO:0016021
;
integral to membrane ( ydeY )
|
|
PID
|
1787793
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YDEY_ECOLI
(
P77672
)
|
|
- Protein name
|
Hypothetical ABC transporter permease protein ydeY.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydeY; OrderedLocusNames=b1514;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
lsrC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane ABC transporter permease protein ydeY
|
|
PSI-BLAST
|
Inner membrane ABC transporter permease protein ydeY
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
AI2 transporter [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MLKFIQNNRE ITALLAVVLL FVLPGFLDRQ YLSVQTLTMV YSSAQILILL AMGATLVMLT RNIDVSVGSI
0071 TGMCAVLLGM LLNAGYSLPV ACVATLLLGL LAGFFNGVLV AWLKIPAIVA TLGTLGLYRG IMLLWTGGKW
0141 IEGLPAELKQ LSAPLLLGVS AIGWLTIILV AFMAWLLAKT AFGRSFYATG DNLQGARQLG VRTEAIRIVA
0211 FSLNGCMAAL AGIVFASQIG FIPNQTGTGL EMKAIAACVL GGISLLGGSG AIIGAVLGAW FLTQIDSVLV
0281 LLRIPAWWND FIAGLVLLAV LVFDGRLRCA LERNLRRQKY ARFMTPPPSV KPASSGKKRE AA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATCAGGGCGA AATTACCCAC TCTGCACTGA
-070 CCGAGCGCGA TATTAATGTC GAGACTATTA TGCGCGTTGC CTTCGGCGAT AGTCAGCGTC AGGAGGCGTC
0001 atgctgaagt ttattcagaa caaccgtgaa atcacggcac tgctggcggt ggtgctgctg tttgtattac
0071 ccggttttct cgaccgccag tatttaagtg tgcaaacgct gaccatggtt tatagcagcg cgcaaatcct
0141 gatcctgctg gcaatgggcg cgacgctggt aatgcttacg cgcaatattg atgtttcagt gggttcgatt
0211 accggaatgt gcgcggtgct gttggggatg ttactgaacg caggatattc actacctgtt gcttgtgtcg
0281 cgactttact gcttggtttg ctcgcgggat ttttcaacgg tgtcctggtc gcgtggctaa agatccctgc
0351 cattgttgcc acccttggca cgttagggtt gtacagaggc atcatgttgc tgtggactgg cggcaaatgg
0421 attgaagggt tacccgccga actgaaacag ctctccgccc cgctgctgct tggcgtttca gcaattggtt
0491 ggttgacgat aattctggtg gcatttatgg cctggctgct ggcaaagacg gcgtttggac gcagttttta
0561 tgccacgggc gataatttac agggcgctcg tcaactgggc gttcgtactg aagccattcg cattgtggca
0631 ttttcgttga acggctgcat ggcggcactg gcgggaattg tgtttgcttc gcagattggt tttatcccca
0701 accagaccgg taccgggctg gagatgaaag caattgcagc ctgcgtgctg ggcggcatta gtttgctcgg
0771 tggttccggt gcgatcattg gtgcggtact cggcgcatgg ttcctgacgc agatcgatag cgtactggtg
0841 ctgttgcgca ttccggcatg gtggaatgat tttatcgcgg gtctggttct gctggcggtg ctggtgtttg
0911 atggacgcct gcgttgtgcg ctggaacgta atctacggcg gcaaaaatat gcccgcttta tgacgccacc
0981 gccatccgtt aaacccgctt cgtcaggtaa aaaacgggag gccgcataaT GCGTATTCGC TACGGTTGGG
1051 AACTGGCTCT TGCCGCACTG CTCGTTATTG AGATTGTCGC ATTTGGTGCA ATTAACCCGC GAATGTTAGA
1121 TCTCAATAT
|
