|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ydeO
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ydeO
Search strains by all related name:
ydeO b1499 ECK1493 f253 JW1494
|
General information (Go to Linear View: )
|
|
Gene Name
|
ydeO
|
|
Alternative name
|
b1499,ECK1493,f253,JW1494
|
|
Location, Length
|
1,580,950 - 1,581,711
(
-
)
;
34.07
min
;
762
(bp) ,
253
(aa)
|
|
Product
|
UV-inducible global regulator, EvgA-, GadE-dependent
|
|
Operon Name
|
safA-ydeO
|
|
Note
|
putative ARAC-type regulatory protein; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
|
|
Function
|
regulator; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( ydeO )
GO:0003700
;
transcription factor activity ( ydeO )
GO:0005622
;
intracellular ( ydeO )
GO:0006350
;
transcription ( ydeO )
GO:0006355
;
regulation of transcription, DNA-dependent ( ydeO )
GO:0043565
;
sequence-specific DNA binding ( ydeO )
GO:0045449
;
regulation of transcription ( ydeO )
|
|
PID
|
1787776
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YHIW_ECOLI
(
P37638
)
|
|
- Protein name
|
Putative HTH-type transcriptional regulator yhiW.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yhiW; OrderedLocusNames=b3515, z4928, ECs4395, SF3596, S4171;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydeO
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
HTH-type transcriptional regulator ydeO
|
|
PSI-BLAST
|
HTH-type transcriptional regulator ydeO
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted DNA-binding transcriptional acfivator [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
HTH_ARAC_FAMILY_1
|
| Sequences |
Amino acid
FASTA format
|
0001 MSLVCSVIFI HHAFNANILD KDYAFSDGEI LMVDNAVRTH FEPYERHFKE IGFTENTIKK YLQCTNIQTV
0071 TVPVPAKFLR ASNVPTGLLN EMIAYLNSEE RNHHNFSELL LFSCLSIFAA CKGFITLLTN GVLSVSGKVR
0141 NIVNMKPAHP WKLKDICDCL YISESLLKKK LKQEQTTFSQ ILLDARMQHA KNLIRVEGSV NKIAEQCGYA
0211 STSYFIYAFR KHFGNSPKRV SKEYRCQSHT GMNTGNTMNA LAI
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tcattatcaa tagtttgcaa ggctgaaaac
-070 aaacagcaaa ttataaatat gaaatgttaa aaaagtatcg ataaaaactt tattgtttta aggagataaa
0001 atgtcgctcg tttgttctgt tatatttatt catcatgcct tcaacgctaa cattttagat aaagattacg
0071 ccttctctga cggcgagatc ctgatggtag ataacgctgt tcgtacgcat tttgaacctt atgagcggca
0141 ttttaaagag atcggattta ctgaaaatac cattaaaaaa tatctacaat gcactaacat ccagacagtg
0211 acggtgcctg ttcctgcgaa gtttttacgt gcttcaaatg taccgactgg attgcttaat gaaatgattg
0281 cttatctcaa ctcggaagaa cgcaatcatc ataatttttc agaacttttg cttttttctt gcctgtctat
0351 ttttgccgca tgcaaaggtt tcattacact attaactaac ggtgtgctat ccgtttctgg gaaagtgaga
0421 aatattgtca acatgaagcc ggcgcaccca tggaagctga aagatatttg tgactgcctg tacatcagtg
0491 aaagcctgtt gaagaaaaaa cttaagcaag agcaaacgac attctcacag attcttttag atgcaagaat
0561 gcagcacgca aaaaatttga tacgcgtaga aggttcagtc aataaaattg ccgaacaatg tggttatgcc
0631 agtacatctt attttattta tgcgttccgc aaacatttcg gcaacagtcc gaagagagtt tctaaggagt
0701 accgttgtca aagtcacacg ggtatgaata cgggcaacac gatgaatgct ttagctattt gattatttgc
0771 taacgagtag tcaaccacac acgctgcgta agaattaaat ggggcagcca ttccctgccc cgcgttgttt
0841 ttaggcgata tatttattga aa
|
