|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ydcD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ydcD
Search strains by all related name:
ydcD b1457 ECK1451 JW1452
|
General information (Go to Linear View: )
|
|
Gene Name
|
ydcD
|
|
Alternative name
|
b1457,ECK1451,JW1452
|
|
Location, Length
|
1,527,946 - 1,528,428
(
+
)
;
32.93
min
;
483
(bp) ,
160
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
rhsE-ydcD
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1787729
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDCD_ECOLI
(
P31991
;
P77459
)
|
|
- Protein name
|
Hypothetical protein ydcD
|
|
- Synonyms
|
ORF-E2
|
|
- Gene name
|
Name=ydcD; OrderedLocusNames=b1457;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydcD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ydcD
|
|
PSI-BLAST
|
Hypothetical protein ydcD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b1457 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
LEUCINE_ZIPPER
|
| Sequences |
Amino acid
FASTA format
|
0001 MLQIIRGKLV IFLITLCLFV VYLGFDNNSN SDIVFYGHKT PKSVEIYLSE KNIIYKIIND QKISRGNGHF
0071 ISIMVNNYRT HCGVVDINLN FFNDILYSVR LKNISKLENM EFCATKQRVY FSDKNKKASY KIINYGDYYD
0141 VDYYDNNLKN EVFDWIGKWS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGTAGCGATG CATGTATTGA AAAATATAAC
-070 ACTGGGCAAC TCTTCGGGTT AGATGGTATA AAAGCAGATA ATCCAATAAA AGCAAAGCAA GGGAGTTCAG
0001 atgcttcaaa ttattagagg caaacttgtc atttttttaa ttaccctttg tttatttgtt gtttaccttg
0071 ggtttgataa caattcaaat tctgacatcg tattttatgg acataaaaca ccaaagagcg ttgagatata
0141 tctttctgaa aaaaatatta tttataaaat aattaatgac caaaaaatta gtagagggaa tggtcatttt
0211 ataagtataa tggttaataa ttacaggacg cactgtggag tggttgatat aaatcttaat tttttcaatg
0281 atattcttta tagcgtgcga ttaaaaaaca ttagtaaact ggagaatatg gagttctgcg ctacaaaaca
0351 acgggtgtat tttagtgata aaaacaagaa ggctagttat aaaataatta attatggaga ctattatgat
0421 gttgattatt atgataacaa tttgaaaaat gaagtttttg actggattgg taaatggtca taaTGAACAA
0491 CACCAGAAAG AGAAAAATAT AAAATACATA CAGAAAGACA TGAGAGCAAG GGACGGGGCA GGGCAAGATC
0561 ATGAAAATTG TGATGTAAAT CAC
|
