|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rhsE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rhsE
Search strains by all related name:
rhsE b1456 ECK1450 JW1451
|
General information (Go to Linear View: )
|
|
Gene Name
|
rhsE
|
|
Alternative name
|
b1456,ECK1450,JW1451
|
|
Location, Length
|
1,525,926 - 1,527,962
(
+
)
;
32.89
min
;
2037
(bp) ,
678
(aa)
|
|
Product
|
|
|
Operon Name
|
rhsE-ydcD
|
|
Note
|
pseudogene, rhsE element core protein RhsE
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RHSE_ECOLI
(
P24211
;
P76869; P77471
)
|
|
- Protein name
|
RhsE protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rhsE; OrderedLocusNames=b1456;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rhsE
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein rhsE
|
|
PSI-BLAST
|
Protein rhsE
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
rhsE element core protein RshE [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
|
MMBR References
|
Nucleic Acids Res. 1991;19:7177-7183
The RhsD-E subfamily of Escherichia coli K-12.
Sadosky, A. B., J. A. Gray, and C. W. Hill.
|
J Bacteriol. 1993;175:2799-2808
Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories.
Zhao, S., C. H. Sandt, G. Feulner, D. A. Vlazny, J. A. Gray, and C. W. Hill.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAACAGACAC CCGTTTCTCT GAAGTAAAAT
-070 CCCAGACTAA ATCATCACAT AACCATGACA TTTTTCTGAT ATTCCCCGGT AACGCCAGAT GTCGACTCGC
0001 ttaaccaccc tcagccatac cagtgaaggc caccgcgtgt cggtccacta cggctatgac gataaaggcc
0071 gcctgaccgg cgaacgccag acggtggaga acccggagac gggggaactg ctgtggcacc atgagaccgg
0141 acatgcgtac aacgaacagg ggctggcaaa ccgcgtcacg ccggacagtc tgccgccggt ggagtggctg
0211 acctacggca gcggctatct tgcgggcatg aagctgggcg ggacgccgct gctggagttc acgcgcgacc
0281 gcctgcaccg tgagacggtg cgcagcttcg gcagcatggc aggcagtaat gccgcatata aactgaccag
0351 cacatacacc cccgcaggcc agttacagag ccagcacctg aacagcctgg tgtatgaccg tgactacggg
0421 tggaatgaca acggcgacct ggtgcgcatc agcggcccgc gacagacgcg ggaatacggc tacagcgcca
0491 cgggcaggct ggagagtgtg cgcaccctcg caccagacct ggacatccgc atcccgtatg ccacggaccc
0561 ggcgggcaac cggctgccgg acccggagct gcacccggac agtacactca cagtgtggcc ggataaccgc
0631 atcgcggagg atgcgcacta tgtctaccgc cacgatgaat acggcaggct gacggagaag acggaccgca
0701 tcccggcggg tgtgatacgg acggacgacg agcggaccca ccactaccac tacgacagcc agcaccgcct
0771 ggtgttctac acgcggatac agcatggcga gccactggtc gagagccgct acctctacga cccgctggga
0841 cggcgaatgg caaaacgggt ctggcggcgg gagcgtgacc tgacggggtg gatgtcgctg tcgcgtaaac
0911 cggaggtgac gtggtatggc tgggacggag acaggctgac gacggtgcag actgacacca cacgtatcca
0981 gacggtatac gagccgggaa gcttcacgcc gctcatccgg gtcgagacag agaacggcga gcgggaaaaa
1051 gcgcagcggc gcagcctggc agagacgctc cagcaggaag ggagtgagaa cggccacggc gtggtgttcc
1121 cggctgaact ggtgcggctg ctggacaggc tggaggaaga aatccgggca gaccgcgtga gcagtgaaag
1191 ccgggcgtgg cttgcgcagt gcgggctgac ggtggagcaa ctggccagac aggtggagcc ggaatacaca
1261 ccggcgcgaa aagttcattt ttaccactgc gaccaccggg gcctgccgct ggcgctcatc agcgaagacg
1331 gcaatacggc gtggcgcggg gagtatgatg aatggggcaa ccagcttaat gaggagaacc cgcatcacct
1401 gcaccagccg taccgtctgc cagggcagca gcatgatgag gagtcggggc tgtactataa ccgtcaccgg
1471 cactacgatc cgttgcaggg gcggtatatc accccggacc cgattgggtt gagaggtgga tggaatatgt
1541 atcagtatcc gttgaatccc atacaagtga tagacccaat ggggttagat gcgattgaga atatgacatc
1611 aggtggacta atttatgccg tatctggtgt acctggattg attgctgcaa acagcattac taacagtgct
1681 taccagttcg gttatgatat ggatgctatt gttggcggag ctcataatgg ggccgccgat gcaatgagac
1751 attgttactt gatgtgtcga atgactaaga catttggatc aacaatagct gacgtgatag gtaaaaatca
1821 tgaggcggca ggggatagac aaggtcagcc agctaaagaa agaatcatgg atcttaaaaa taacactgtc
1891 ggtattgctt gtggcgattt ttctgccaaa tgtagcgatg catgtattga aaaatataac actgggcaac
1961 tcttcgggtt agatggtata aaagcagata atccaataaa agcaaagcaa gggagttcag atgcttcaaa
2031 ttattagAGG CAAACTTGTC ATTTTTTTAA TTACCCTTTG TTTATTTGTT GTTTACCTTG GGTTTGATAA
2101 CAATTCAAAT TCTGACATCG TATTTTATGG ACATAAA
|
