|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rcbA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rcbA
Search strains by all related name:
rcbA b1347 ECK1344 f69 JW1341 ydaC
|
General information (Go to Linear View: )
|
|
Gene Name
|
rcbA
|
|
Alternative name
|
b1347,ECK1344,f69,JW1341,ydaC
|
|
Location, Length
|
1,411,555 - 1,411,764
(
-
)
;
30.42
min
;
210
(bp) ,
69
(aa)
|
|
Product
|
double-strand break reduction protein, Rac prophage
|
|
Operon Name
|
recET-lar-ydaCQ-intR
|
|
Note
|
|
|
Function
|
Phage or Prophage Related
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ydaC )
|
|
PID
|
1787609
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YDAC_ECOLI
(
P33230
;
P77683
)
|
|
- Protein name
|
Hypothetical protein ydaC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydaC; OrderedLocusNames=b1347;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydaC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ydaC
|
|
PSI-BLAST
|
Hypothetical protein ydaC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Rac prophage; predicted protein [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MYKITATIEK EGGTPTNWTR YSKSKLTKSE CEKMLSGKKE AGVSREQKVK LINFNCEKLQ SSRIALYSN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgtaacggat gcgaatcccg aaccggttat
-070 ggtggaagtg aaaaagaagc actcgaaaga tggaataaac gaaccactgg aaataataat ggaggtgttc
0001 atgtataaaa ttaccgccac tattgaaaag gaaggtggca ctcctactaa ctggacaaga tattcaaaat
0071 ctaaactaac gaaatcagaa tgcgaaaaaa tgctctcagg taaaaaagaa gcaggcgttt ccagagagca
0141 gaaagtaaaa ctgataaatt ttaattgcga gaaacttcag tcctcgagaa ttgcattgta ttcaaattaa
0211 aacttcatag ctgattatta ataatcaaca tcgggcgtca atttcagtct aacattggcg cctgccagag
0281 gtgatgcgat ggcacaagta atctttaatg
|
