|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
20
(LD)
,
OCR70
(D)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sapB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sapB
Search strains by all related name:
sapB b1293 ECK1288 f321 JW1286
|
General information (Go to Linear View: )
|
|
Gene Name
|
sapB
|
|
Alternative name
|
b1293,ECK1288,f321,JW1286
|
|
Location, Length
|
1,352,529 - 1,353,494
(
-
)
;
29.15
min
;
966
(bp) ,
321
(aa)
|
|
Product
|
antimicrobial peptide transport ABC transporter permease
|
|
Operon Name
|
sapABCDF
|
|
Note
|
homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( sapB )
GO:0005886
;
plasma membrane ( sapB )
GO:0006810
;
transport ( sapB )
GO:0006857
;
oligopeptide transport ( sapB )
GO:0015031
;
protein transport ( sapB )
GO:0015198
;
oligopeptide transporter activity ( sapB )
GO:0016020
;
membrane ( sapB )
GO:0016021
;
integral to membrane ( sapB )
|
|
PID
|
1787550
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
SAPB_ECOLI
(
Q47623
;
P76838
)
|
|
- Protein name
|
Peptide transport system permease protein sapB.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=sapB; OrderedLocusNames=b1293, z2496, ECs1870;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
sapB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Peptide transport system permease protein sapB
|
|
PSI-BLAST
|
Peptide transport system permease protein sapB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
homolog of Salmonella peptide transport permease protein [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
GenBank submission U08190. 1994
Bergler, H., et al.
|
Personal communication.
Wu, H. C., and K. Rudd.
|
| Sequences |
Amino acid
FASTA format
|
0001 MIIFTLRRIL LLIVTLFLLT FVGFSLSYFT PHAPLQGASL WNAWVFWFNG LIHWDFGVSS INGQPIAEQL
0071 KEVFPATMEL CILAFGFALI VGIPVGMIAG ITRHKWQDNL INAIALLGFS IPVFWLALLL TLFCSLTLGW
0141 LPVSGRFDLL YEVKPITGFA LIDAWLSDSP WRDEMIMSAI RHMILPVITL SVAPTTEVIR LMRISTIEVY
0211 DQNYVKAAAT RGLSRFTILR RHVLHNALPP VIPRLGLQFS TMLTLAMITE MVFSWPGLGR WLINAIRQQD
0281 YAAISAGVMV CGSLVIIVNV ISDILGAMAN PLKHKEWYAL R
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aggcctatcg gtacgatatc aaaggtctgg
-070 tacttagccc gtttggtaac gcctcctttg ctggggtgta tcgcgagaaa caggatgagg tgaaaaaacc
0001 atgattatct tcaccttacg ccgcattttg ttattgattg tcaccttgtt cctgctgacc ttcgttggct
0071 tcagcttgag ctatttcacc cctcatgcgc cgttacaagg cgcgtcactg tggaatgcct gggtgttctg
0141 gtttaacggc ctgatccact gggattttgg tgtttccagc attaacggtc aaccgattgc cgaacagtta
0211 aaagaggtct tcccggcgac gatggaactg tgcatcctcg ccttcggttt tgcgctgatt gttggcatcc
0281 ccgtggggat gattgccggg attacgcgcc ataagtggca ggataacttg atcaacgcca tcgccttact
0351 gggcttttca atcccggtgt tctggctggc gcttctgttg acgctgtttt gttcactcac gctaggttgg
0421 ttgcccgttt cagggcgttt cgatctgctc tacgaagtga aaccgattac cggttttgcg ttgattgatg
0491 cctggctttc ggactcacca tggcgggatg aaatgatcat gagcgcaatc cgccatatga tattgcccgt
0561 gatcaccctg tcggttgcgc caacaactga agtgatccgc ctgatgcgta tcagcactat cgaagtgtat
0631 gaccagaact atgtaaaagc ggcggcgacc cgcggtttgt cgcgctttac tattttgcgt cgccacgttc
0701 tgcataacgc gttaccgccg gttattcctc gcctgggctt acagttttcc accatgctga cgctggcgat
0771 gatcaccgaa atggttttta gctggccggg tttagggcgc tggttaatta acgccatccg ccagcaggat
0841 tacgcagcca tttccgccgg agtgatggtg tgtggctcac tggtcattat tgttaacgtg atttctgata
0911 ttttgggtgc catggctaac cctctgaaac ataaggaatg gtatgcctta cgatagcgta tacagcgaaa
0981 agcgcccgcc gggcacgctg cgtaccgcct ggcgcaaatt ttatagtgac gcctctgcga tggtcggcct
1051 gtacggctgc gcgggg
|
