|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
20
(LD)
,
OCR70
(D)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sapD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sapD
Search strains by all related name:
sapD b1291 ECK1286 f330 JW1284 trkE
|
General information (Go to Linear View: )
|
|
Gene Name
|
sapD
|
|
Alternative name
|
b1291,ECK1286,f330,JW1284,trkE
|
|
Location, Length
|
1,350,660 - 1,351,652
(
-
)
;
29.11
min
;
993
(bp) ,
330
(aa)
|
|
Product
|
antimicrobial peptide transport ABC system ATP-binding protein
|
|
Operon Name
|
sapABCDF
|
|
Note
|
putative ATP-binding protein of peptide transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( sapD )
GO:0005524
;
ATP binding ( sapD )
GO:0005886
;
plasma membrane ( sapD )
GO:0006810
;
transport ( sapD )
GO:0006857
;
oligopeptide transport ( sapD )
GO:0015031
;
protein transport ( sapD )
GO:0015197
;
peptide transporter activity ( sapD )
GO:0015198
;
oligopeptide transporter activity ( sapD )
GO:0015833
;
peptide transport ( sapD )
GO:0016020
;
membrane ( sapD )
GO:0016887
;
ATPase activity ( sapD )
GO:0017111
;
nucleoside-triphosphatase activity ( sapD )
|
|
PID
|
1787548
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
SAPD_ECOLI
(
P36635
)
|
|
- Protein name
|
Peptide transport system ATP-binding protein sapD.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b1291, c1768, z2499, ECs1868, SF1296, S1378;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
sapD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain 1, Malk
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Peptide transport system ATP-binding protein sapD
|
|
PSI-BLAST
|
Methionine import ATP-binding protein metN
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative ATP-binding protein of peptide transport system [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
ATP_GTP_A
|
|
MMBR References
|
J Bacteriol. 1971;108(2):639-44.
Potassium transport loci in Escherichia coli K-12.
Epstein W, Kim BS.
(
4942756
)
|
EMBO J. 1993;12:4053-4062
Molecular genetic analysis of a locus required for resistance to antimicrobial peptides in Salmonella typhimurium.
Parra-Lopez, C., M. T. Baer, and E. A. Groisman.
|
EMBO J. 1994;13:3964-3972
A Salmonella protein that is required for resistance to antimicrobial peptides and transport of potassium.
Parra-Lopez, C., R. Lin, A. Aspedon, and E. A. Groisman.
|
Mol Microbiol. 1993;9(3):533-43.
NAD+ binding to the Escherichia coli K(+)-uptake protein TrkA and sequence similarity between TrkA and domains of a family of dehydrogenases suggest a role for NAD+ in bacterial transport.
Schlosser A, Hamann A, Bossemeyer D, Schneider E, Bakker EP.
(
8412700
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MPLLDIRNLT IEFKTGDEWV KAVDRVSMTL TEGEIRGLVG ESGSGKSLIA KAICGVNKDN WRVTADRMRF
0071 DDIDLLRLSA RERRKLVGHN VSMIFQEPQS CLDPSERVGR QLMQNIPAWT YKGRWWQRFG WRKRRAIELL
0141 HRVGIKDHKD AMRSFPYELT EGECQKVMIA IALANQPRLL IADEPTNSME PTTQAQIFRL LTRLNQNSNT
0211 TILLISHDLQ MLSQWADKIN VLYCGQTVET APSKELVTMP HHPYTQALIR AIPDFGSAMP HKSRLNTLPG
0281 AIPLLEQLPI GCRLGPRCPY AQRECIVTPR LTGAKNHLYA CHFPLNMEKE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ggactgtcat gctgccaggt gcggcaatta
-070 tgattagcgt gttgttggtt aacctccttg gcgatggcgt tcgtcgtgcg attattgcgg gggtggaata
0001 atgccattac tcgatattcg taacctgacc attgaattta aaaccggtga tgagtgggtt aaagccgtcg
0071 accgggtaag tatgacctta accgaaggtg aaatccgcgg tcttgttggt gaatccggtt ccggcaagag
0141 tttgattgcg aaagcgattt gtggggtgaa taaagataac tggcgtgtta ctgctgaccg tatgcgtttt
0211 gatgatatcg atttgctgcg tctctccgca cgcgaacggc gcaaactggt tggccataac gtgtcgatga
0281 ttttccagga accgcagtcg tgtcttgacc cttcagaacg tgtgggccgc cagttgatgc aaaacatccc
0351 agcctggacc tataaaggcc gttggtggca gcgttttggc tggcgcaaac gccgtgccat tgaactgctg
0421 caccgcgtgg ggattaaaga tcacaaagat gcgatgcgca gttttcccta tgagttgacc gaaggtgaat
0491 gtcagaaagt gatgatagcc attgcactgg cgaatcaacc gcgtctgctg attgctgacg aaccgaccaa
0561 ctcaatggag ccaacaaccc aggcgcaaat ctttcgcctg ctgacgcgtc tcaaccaaaa cagcaatacc
0631 actattttgc ttatcagcca tgacttacaa atgcttagcc aatgggcgga taaaattaac gtgctttact
0701 gcggtcaaac agtggaaacc gcgccgagta aggagttggt gacgatgcca catcatcctt atacccaggc
0771 gctgatccgc gcgataccag acttcggcag cgcgatgccg cataaaagtc gcctcaatac gctgcccggc
0841 gctatcccac tgctggaaca gttaccgatt ggttgtcgtc tggggccacg ttgcccgtat gcacaacgag
0911 aatgcattgt gacgccacgt ttgacggggg cgaaaaatca tctctatgcc tgtcatttcc cgctgaacat
0981 ggagaaagag tgagatgatc gaaacgctgc ttgaagtgcg taatttaagt aaaacgttcc gctaccggac
1051 cggctggttt cgtcgtcaga ccgtagaagc ggtaaaaccc ttg
|
