MG1655
W3110
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Gene Report : yciT
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion OCR69,70-1 (D)  ,  OCR69-2 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  yciT
Related strains
     Strains Search Search strains by gene name:  yciT   Search strains by all related name:  yciT b1284 deoT ECK1279 f249 JW1276

General information  (Go to Linear View:)
 Gene Name yciT  
 Alternative name b1284,deoT,ECK1279,f249,JW1276  
 Location, Length 1,341,621 - 1,342,370 (  -  ) ;   28.92 min ; 750 (bp) ,   249 (aa) Go to Linear View
 Product global regulator of transcription; DeoR family  
 Operon Name yciZT  
 Note putative DEOR-type transcriptional regulator; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription  
 Function putative regulator; Not classified  
 Gene Ontology GO:0003677 ; DNA binding ( yciT )
GO:0003700 ; transcription factor activity ( yciT )
GO:0005622 ; intracellular ( yciT )
GO:0006350 ; transcription ( yciT )
GO:0006355 ; regulation of transcription, DNA-dependent ( yciT )
 PID 1787540  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show details [ 1 more] )
  botton Entry name(Acc.no) AGAR_ECOLI ( P42902 )
    -  Protein name Putative aga operon transcriptional repressor.  
    -  Synonyms  
    -  Gene name Name=agaR; OrderedLocusNames=b3131, c3886, z4483, ECs4009;  

 Linear View (Whole Mode)
View Location
   1330.0  –  1355.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP yciT (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of The Lrp-Like Transcriptional Regulator From The Archaeon Pyrococcus Furiosus  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Putative HTH-type transcriptional regulator yciT  
         PSI-BLAST Ribose-5-phosphate isomerase A
    nr     (database updated : 2007.02.20 )
         BLAST predicted DNA-binding transcriptional regulator [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG1349KG 
    EcoCyc yciT 

Sequences
Amino acid
FASTA format 
0001 MNSRQQTILQ MVIDQGQVSV TDLAKATGVS EVTIRQDLNT LEKLSYLRRA HGFAVSLDSD DVETRMMSNY 
0071 TLKRELAEFA ASLVQPGETI FIENGSSNAL LARTLGEQKK NVTIITVSSY IAHLLKDAPC EVILLGGVYQ 
0141 KKSESMVGPL TRQCIQQVHF SKAFIGIDGW QPETGFTGRD MMRTDVVNAV LEKECEAIVL TDSSKFGAVH 
0211 SYSIGPVERF NRVITDSKIR ASDLMHLEHS KLTIHVVDI
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             gggagattta acaatcgtgc cttcaggttt 
-070 tcctatttga ggatgcccgg cgcgtcagta tttttttatt aagtattata acgttataag aattacagcg 
0001 atgaattccc gacaacaaac tattctacag atggtcattg accagggtca ggttagcgta accgatctgg 
0071 caaaagccac tggagtttct gaagttacca ttcgccagga tctcaacaca ctcgaaaaac tgagttacct 
0141 ccgccgtgca catggctttg ctgtttcgct tgatagtgat gacgtcgaaa cccgtatgat gagcaactat 
0211 acgctgaagc gtgaactcgc cgagtttgcc gcgtcgctgg ttcaaccggg cgaaaccatc tttatcgaaa 
0281 atggcagcag caatgcccta ctcgcccgga ctctgggcga gcagaagaaa aatgtcacta tcatcacggt 
0351 cagcagctac atcgcgcatt tgctgaaaga cgcgccttgt gaagttattt tgctcggtgg cgtgtatcag 
0421 aaaaaaagcg aaagtatggt tggccctttg acacgccagt gcatccaaca ggtgcatttc agcaaagcat 
0491 ttattggtat tgatggctgg caacctgaaa ctggatttac cggtcgcgat atgatgcgta ccgatgtggt 
0561 caatgccgtg ctggaaaaag agtgcgaagc gatagtcctg actgacagct cgaaatttgg tgctgtacat 
0631 tcatactcca tcggtcccgt tgagcgattc aatcgcgtga ttaccgattc gaaaatacgc gccagcgatc 
0701 tgatgcatct tgagcacagt aaactcacca ttcacgtcgt tgacatttaa ccatttccct tctctacgga 
0771 tgatttgcag tttggcaaat catccgctct aagatgattc ctggttgata attaagacta tttacctgtt 
0841 attaacactc