|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR69-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yciH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yciH
Search strains by all related name:
yciH b1282 ECK1277 JW1274
|
General information (Go to Linear View: )
|
|
Gene Name
|
yciH
|
|
Alternative name
|
b1282,ECK1277,JW1274
|
|
Location, Length
|
1,340,682 - 1,341,008
(
+
)
;
28.90
min
;
327
(bp) ,
108
(aa)
|
|
Product
|
initiation factor function partial mimic, SUI1 family
|
|
Operon Name
|
yciSM-pyrF-yciH
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0003743
;
translation initiation factor activity ( yciH )
GO:0006412
;
translation ( yciH )
GO:0006413
;
translational initiation ( yciH )
GO:0006417
;
regulation of translation ( yciH )
|
|
PID
|
87081867
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YCIH_ECOLI
(
P08245
;
P76033
)
|
|
- Protein name
|
Protein yciH.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yciH; OrderedLocusNames=b1282;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yciH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Nmr Solution Structure Of The Product Of The E. Coli Ycih Gene
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein yciH
|
|
PSI-BLAST
|
Protein yciH
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Chain A, Nmr Solution Structure Of The Product Of The E. Coli Ycih Gene
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
SUI1
|
| Sequences |
Amino acid
FASTA format
|
0001 MSDSNSRLVY STETGRIDEP KAAPVRPKGD GVVRIQRQTS GRKGKGVCLI TGVDLDDAEL TKLAAELKKK
0071 CGCGGAVKDG VIEIQGDKRD LLKSLLEAKG MKVKLAGG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CTGGTGTTGA TTATATGGTG ATTGGTCGCC
-070 CGGTAACGCA ATCGGTAGAT CCAGCGCAGA CGCTGAAAGC GATCAACGCC TCTTTACAGC GGAGTGCATG
0001 atgagtgatt ccaacagccg tctggtctac tcaacggaaa ccggacgtat tgatgagccc aaagcggccc
0071 ctgtacgccc taaaggcgac ggtgtggtgc gtattcagcg tcagaccagt ggacgtaaag gtaagggcgt
0141 ttgcctgatt accggtgtcg atctcgatga tgccgaactg acaaaacttg cagcggaact gaagaaaaaa
0211 tgcggctgcg gcggagcagt taaagatgga gttattgaaa tccagggcga taagcgtgat ttattaaaat
0281 cactacttga agcgaaaggg atgaaggtaa aactcgcagg cggttaaCAT AAAAAGCCAC GGATATATCC
0351 GTGGCTTTCG AATATTTTAC TGTGCGTATT ATTCAGTTAT TTCGTACTGA ACAGAATCAA GCGTATTATA
0421 ATTGCGA
|
