|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(tonB-cysB)206
,
OCR68,69-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yciV
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yciV
Search strains by all related name:
yciV b1266 ECK1260 JW1258 o293 o293a trpH yciV
|
General information (Go to Linear View: )
|
|
Gene Name
|
yciV
|
|
Alternative name
|
b1266,ECK1260,JW1258,o293,o293a,trpH,yciV
|
|
Location, Length
|
1,321,244 - 1,322,125
(
+
)
;
28.48
min
;
882
(bp) ,
293
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
yciVOQ
|
|
Note
|
putative enzymes
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( trpH )
GO:0003824
;
catalytic activity ( trpH )
GO:0003887
;
DNA-directed DNA polymerase activity ( trpH )
GO:0006260
;
DNA replication ( trpH )
|
|
PID
|
1787520
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
TRPH_ECOLI
(
P77766
)
|
|
- Protein name
|
Protein trpH.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=trpH; OrderedLocusNames=b1266;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yciV
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein trpH
|
|
PSI-BLAST
|
Protein trpH
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b1266 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MSDTNYAVIY DLHSHTTASD GCLTPEALVH RAVEMRVGTL AITDHDTTAA IAPAREEISR SGLALNLIPG
0071 VEISTVWENH EIHIVGLNID ITHPLMCEFL AQQTERRNQR AQLIAERLEK AQIPGALEGA QRLAQGGAVT
0141 RGHFARFLVE CGKASSMADV FKKYLARGKT GYVPPQWCTI EQAIDVIHHS GGKAVLAHPG RYNLSAKWLK
0211 RLVAHFAEHH GDAMEVAQCQ QSPNERTQLA ALARQHHLWA SQGSDFHQPC PWIELGRKLW LPAGVEGVWQ
0281 LWEQPQNTTE REL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AACTAGTTCG ATGATTAATT GTCAACAGCT
-070 CATTTCAGAA TATTTGCCAG AACCGTTATG ATGTCGGCGC AAAAAACATT ATCCAGAACG GGAGTGCGCC
0001 ttgagcgaca cgaattatgc agtgatttac gacctgcaca gccataccac agcttccgat ggctgcctga
0071 cgccagaagc attggtgcac cgtgcagtcg agatgcgcgt cggcaccctg gcgatcaccg accatgacac
0141 cacagctgca atcgcgccag caagagagga aatttcacgt tcgggactgg cgttgaatct tattcccggc
0211 gtggaaattt ccacggtctg ggaaaatcat gaaattcata ttgtcgggct gaatattgat attactcatc
0281 cgctaatgtg tgagttcctc gcgcagcaga cagaacggcg caatcagcgg gcgcagctga ttgccgaaag
0351 acttgaaaaa gcgcaaatac ctggggcgct ggaaggcgca caacgactgg cgcagggcgg cgcagtgacg
0421 cgcggtcatt ttgcgcgttt ccttgttgag tgcggcaaag ccagttcaat ggcggatgtc tttaaaaagt
0491 atctggcgcg cgggaaaacc ggatacgttc cgccacagtg gtgtacaata gaacaagcta ttgatgtcat
0561 tcatcattct ggcggtaagg cggtgctagc tcatcctggg cggtacaatc ttagtgctaa atggctgaaa
0631 agattggttg cgcattttgc cgaacaccac ggtgacgcga tggaagtcgc gcagtgccag caatcgccca
0701 atgaacgtac ccagctggcg gcccttgcgc gtcagcatca tttatgggca tcacaaggat ctgattttca
0771 tcagccatgc ccgtggatcg aactgggtcg taaactctgg ctgcccgcag gcgttgaagg cgtctggcag
0841 ctatgggaac agccgcagaa caccacagag agggaattat gaGCCAGTTT TTTTATATTC ATCCTGATAA
0911 CCCACAGCAA CGTCTGATCA ACCAGGCGGT GGAGATCGTG CGTAAAGGCG GGGTGATTGT TTATCCAACT
0981 GA
|
