|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(tonB-cysB)206
,
OCR68,69-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yciF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yciF
Search strains by all related name:
yciF b1258 ECK1252 JW1250
|
General information (Go to Linear View: )
|
|
Gene Name
|
yciF
|
|
Alternative name
|
b1258,ECK1252,JW1250
|
|
Location, Length
|
1,313,294 - 1,313,794
(
-
)
;
28.31
min
;
501
(bp) ,
166
(aa)
|
|
Product
|
putative rubrerythrin/ferritin-like metal-binding protein
|
|
Operon Name
|
yciGFE
|
|
Note
|
putative structural proteins
|
|
Function
|
putative structure; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1787512
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
yciF
(
EG11126
)
|
|
Number of removed
|
0 aa cleaved
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YCIF_ECOLI
(
P21362
)
|
|
- Protein name
|
Protein yciF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yciF; OrderedLocusNames=b1258;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yciF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Ycfi, A Putative Structural Protein From Rhodopseudomonas Palustris.
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein yciF
|
|
PSI-BLAST
|
Protein yciF
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
yciF gene product
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
MICROBODIES_CTER
|
| Sequences |
Amino acid
FASTA format
|
0001 MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE THGQIERIDQ VVESESNLKI
0071 KRMKCVAMEG LIEEANEVIE STEKNEVRDA ALIAAAQKVE HYEIASYGTL ATLAEQLGYR KAAKLLKETL
0141 EEEKATDIKL TDLAINNVNK KAENKA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tcaggcaaat cctgattcac cgttaattat
-070 taatatcagc tgataaagat aattgcatct gcgggccgta tggctcgcag tgatttcact ggagaaaaat
0001 atgaatatga agaccattga agatgtattt attcacctgc tttcagatac ctacagcgca gaaaaacaat
0071 taacccgggc actggcaaaa ctcgcaagag caacatcaaa tgaaaaatta agtcaggctt ttcatgcgca
0141 cctcgaggaa actcatggac agattgaacg tattgatcaa gttgtggagt ccgaatcgaa cctgaaaatt
0211 aagcgcatga aatgtgtggc aatggaaggt cttattgaag aagctaatga ggtcatcgaa agtaccgaga
0281 aaaacgaagt gcgtgatgcc gcactgattg ccgcagcaca gaaagtcgag cattatgaga ttgccagtta
0351 cgggacatta gcgacgctgg ctgaacaatt aggttaccgt aaagcagcga agcttctgaa agaaaccctg
0421 gaagaagaaa aggccaccga catcaaactg actgatctgg ccattaataa cgtaaataag aaagccgaaa
0491 ataaagcctg aaatatgaat tttaactttt agtcatttta taaagaggac attttcatga atcgtattga
0561 acattatcat gactggttac gtgacgccca cgcaatggaa a
|
