|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(tonB-cysB)206
,
OCR68,69-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ompW
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ompW
Search strains by all related name:
ompW b1256 ECK1250 JW1248 yciD
|
General information (Go to Linear View: )
|
|
Gene Name
|
ompW
|
|
Alternative name
|
b1256,ECK1250,JW1248,yciD
|
|
Location, Length
|
1,312,044 - 1,312,682
(
+
)
;
28.28
min
;
639
(bp) ,
212
(aa)
|
|
Product
|
outer membrane protein W
|
|
Operon Name
|
ompW
|
|
Note
|
putative outer membrane protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane
|
|
Function
|
putative membrane; Not classified
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ompW )
GO:0009279
;
cell outer membrane ( ompW )
GO:0016020
;
membrane ( ompW )
GO:0019867
;
outer membrane ( ompW )
|
|
PID
|
1787510
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
ompW
(
EG11124
)
|
|
Number of removed
|
21 aa cleaved
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
OMPW_ECOLI
(
P21364
;
P97217; P97220
)
|
|
- Protein name
|
Outer membrane protein W precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ompW; OrderedLocusNames=b1256, SF1259, S1345;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ompW
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Outer Membrane Protein Ompw
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Outer membrane protein W precursor
|
|
PSI-BLAST
|
Outer membrane protein W precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Outer membrane protein W precursor [Escherichia coli CFT073]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MKKLTVAALA VTTLLSGSAF AHEAGEFFMR AGSATVRPTE GAGGTLGSLG GFSVTNNTQL GLTFTYMATD
0071 NIGVELLAAT PFRHKIGTRA TGDIATVHHL PPTLMAQWYF GDASSKFRPY VGAGINYTTF FDNGFNDHGK
0141 EAGLSDLSLK DSWGAAGQVG VDYLINRDWL VNMSVWYMDI DTTANYKLGG AQQHDSVRLD PWVFMFSAGY
0211 RF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGGGTGAATT ATCATATGTA ATGTGATCTA
-070 TGTAGGATCA TTTGTTACTC CAATGTAGGT ATATTCGTCA CGTTTTTATA ACCATAACGA CGGAGCGGAT
0001 atgaaaaagt taacagtggc ggctttggca gtaacaactc ttctctctgg cagtgccttt gcgcatgaag
0071 caggcgaatt ttttatgcgt gcaggttctg caaccgtacg tccaacagaa ggtgctggtg gtacgttagg
0141 aagtctgggt ggattcagcg tgaccaataa cacgcaactg ggccttacgt ttacttatat ggcgaccgac
0211 aacattggtg tggaattact ggcagcgacg ccgttccgcc ataaaatcgg cacccgggcg accggcgata
0281 ttgcaaccgt tcatcatctg ccaccaacac tgatggcgca gtggtatttt ggtgatgcca gcagcaaatt
0351 ccgtccttac gttggggcag gtattaacta caccaccttc tttgataatg gatttaacga tcatggcaaa
0421 gaggcagggc tttccgatct cagtctgaaa gattcctggg gagctgccgg gcaggtgggg gttgattatc
0491 tgattaaccg tgactggttg gttaacatgt cagtgtggta catggatatc gataccaccg ccaattataa
0561 gctgggcggt gcacagcaac acgatagcgt acgcctcgat ccgtgggtgt ttatgttctc agcaggatat
0631 cgtttttaaT TCCGCACAAA AACGACCCCG TAATATACGG GGTCAATAAG GACATGGTAT AAAGGGTATT
0701 ATTTCTTCGC TTCTACGCCA TCAGTTTCAG AGCGAATTA
|
